Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq238 156 4e-33 seq321 132 4e-26 SEQ15627 122 8e-23 seq1885 89.7 4e-13 >seq238 Length=29854 Score = 156 bits (172), Expect = 4e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| ||||||| || || |||||| Sbjct 20729 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCATCCTC 20788 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || ||||| |||||||||||||||| || ||||| ||||| |||||||| Sbjct 20789 GAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTG 20848 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| || ||||| | |||| | ||||| ||| || || | || | ||| || Sbjct 20849 AATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGCTCCACGTCCAGAGTGATCGTCTT 20908 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || ||||||||||||||| Sbjct 20909 GCCGGTCAATGTCTTCACAAAAATCTGCATG 20939 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||||||||||| || || |||||| Sbjct 21413 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCCTC 21472 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || |||||| |||| |||||||||||||| || || || || |||||||| Sbjct 21473 GAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTG 21532 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| || || || | |||| | |||| ||| || |||| || | ||| || Sbjct 21533 AATTTTCTGCTTGACGTTGTCGATCGAATCCGACGGCTCCACGTCGAGCGTGATCGTCTT 21592 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || || ||||| |||||||| Sbjct 21593 GCCGGTGAGGGTCTTCACAAAGATCTGCAT 21622 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || ||||||||||| || |||| |||||| ||||| Sbjct 20958 ACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGACCGTCCTCA 21017 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || |||||| ||||||| |||||||| || || || ||||| ||||||||| | Sbjct 21018 AGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGA 21077 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||||| || || | |||| | ||||| || || |||| ||| | ||||| Sbjct 21078 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCACGTCGAGGGTAATAGTTTTA 21137 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || ||||| || || |||||||||||| Sbjct 21138 CCCGTAAGAGTCTTGACGAAAATCTGCATG 21167 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || || || || || |||||||| || |||| ||||| ||||| Sbjct 21185 CACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCCTC 21244 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || |||||| ||||||| |||||||| || || || ||||| || ||||| Sbjct 21245 GAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTG 21304 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || || | |||| | || | ||| || || | || | ||| || Sbjct 21305 AATCTTCTGCTTGACGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGTCTT 21364 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || || || ||||||||| Sbjct 21365 GCCGGTCAACGTCTTGACGAAGATCTGCATG 21395 >seq321 Length=26016 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||||||||||| ||||| ||| || Sbjct 10093 CACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTC 10034 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| ||||||||||| || ||||| ||||| |||||||| Sbjct 10033 TAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 9974 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || || | || | | ||| | |||||| || | ||| | ||||| Sbjct 9973 AATCTTCTGCTTCACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTT 9914 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || ||||| || || |||||||||||| Sbjct 9913 ACCCGTAAGAGTCTTCACGAAAATCTGCATG 9883 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||||| || ||||||||||| || |||| ||| || ||| Sbjct 9868 CAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATC 9809 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || ||||| ||||||| || || || || ||||| ||||| |||||||| Sbjct 9808 CTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTC 9749 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | || | | ||||| ||| || || | || | || Sbjct 9748 CTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGT 9689 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||||| || || ||||| ||||||||| Sbjct 9688 CTTGCCGGTCAACGTCTTCACAAAGATCTGCATG 9655 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || ||||||||||| || |||| ||| || |||||| Sbjct 9637 CACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCCTC 9578 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| ||||||| || || || || ||||| ||||| |||||||| Sbjct 9577 TAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTG 9518 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || || | || | | ||||| ||| || || | || | || || Sbjct 9517 AATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTT 9458 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || ||||| ||||||||| Sbjct 9457 GCCGGTCAACGTCTTCACAAAGATCTGCATG 9427 >SEQ15627 Length=1670 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || ||||||||||| ||||||| ||||| || || Sbjct 1390 CACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCTTC 1449 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || ||||| ||||||||||| | || || || | || || |||||||| Sbjct 1450 GAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCCTG 1509 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| || || || | |||| | ||||| ||| || |||| || | || || Sbjct 1510 AATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTCTT 1569 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || || |||||||| ||||| Sbjct 1570 GCCGGTGAGGGTCTTCACAAAAATTTGCAT 1599 >seq1885 Length=10629 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || || ||| |||| Sbjct 6243 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6184 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || ||||| |||||||| ||||| || || || | || Sbjct 6183 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 6124 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 6123 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 6064 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 6063 ATCTGCATG 6055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433703298402988