Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2671 170 4e-37 seq5 129 1e-24 seq7045 98.7 2e-15 seq1 93.3 9e-14 >seq2671 Length=8519 Score = 170 bits (188), Expect = 4e-37 Identities = 678/1056 (64%), Gaps = 52/1056 (5%) Strand=Plus/Plus Query 248419 ATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCG 248478 |||||| ||| |||||| ||||| || ||| |||| |||||||| || ||||| Sbjct 4471 ATGTACGTCATCAAGCGCGACGGTCGTCGCGAAGACGTCAAGTTCGACAAGATTACGGCG 4530 Query 248479 CGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCC 248538 || || | || ||||| || || || | ||| | | ||| || || ||| | Sbjct 4531 CGGATTACCAAACTCTGCTACGGCTTGAACCCCGATTACGTAGACGCCGTTAAGATCTCG 4590 Query 248539 CAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCT 248598 ||||| || | | ||||| ||| |||| ||||| ||| | || |||||| | ||| Sbjct 4591 CAGAAGGTCGTGGCCGGCGTGTACCCCGGCGTAACCACGTCGGAGCTGGACGAGCTGGCT 4650 Query 248599 GCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGGGAG 248657 || |||||||| |||||| | | ||| ||||| |||| ||| |||||| | | | Sbjct 4651 GCCGAGACGGCCGCGTACCAGAGCAC-GCAGCACCCAGACTTCTCCAAGCTGGCGGCGCG 4709 Query 248658 GATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGC--T 248715 |||||||| || | || ||||| | ||||| || ||| || | ||| | | Sbjct 4710 CATCGCCGTGTCGAACCTGCACAAGAACACGAACAAGGTCTTCAGTGACAACATCGAGGT 4769 Query 248716 GACCTACATG-----CCT-------ATGGGAT----------GGTC---GCCGATGACGT 248750 | | ||| | || | |||| | || ||||| ||||| Sbjct 4770 GTTCCACAAGAACCGCCACGAGAAGACGGGAGCAGCCGCGCCGCTCATTGCCGACGACGT 4829 Query 248751 ---CCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAA 248807 | ||| ||| || ||| |||| | | ||| || ||| || | ||| | Sbjct 4830 GTTCGACATCGTGATGCAGCACAAGGACGAGCTCA---ACTCCGCCATCATCCACGACCG 4886 Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 || || |||||||| | ||| | ||||| |||||||||| | || ||| || | Sbjct 4887 CGACTTCGAGTACGACTACTTCGGCTTCAAGACGCTGGAGAGAGGCTACCTCTTCCGCGT 4946 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | ||||| | || || || ||||| ||| | ||||| ||||| | || || || Sbjct 4947 GAACGGCAAAGTGGTAGAGCGGCCGCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCA 5006 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987 |||| ||||| || | ||| |||||||| ||| | | | || Sbjct 5007 CAAGACCGACATCCAGGCGGCGCTGCAGACGTACGAGCTCATGTCGCAGAAGTTCTTCAC 5066 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTCGT 249043 |||||||| || ||||| || |||||||| || |||| || | || |||| Sbjct 5067 GCATGCCACGCCCACGCTGTTTAACGCCGGCACGCCGCGTCCGCAGT----TGTCGTCGT 5122 Query 249044 GCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGA 249103 |||| || || ||||||||||||||||| |||| || || || |||||||| || ||| Sbjct 5123 GCTTCCTGCTAGCCATGCAAGACGACTCCATCGAGGGAATCTACGACACGCTCAAGCAGT 5182 Query 249104 CGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGA 249163 ||| || || || | || || || ||||| || | | |||||||||||| | Sbjct 5183 GCGCGTGCATCTCCAAGTGGGCAGGAGGCATCGGCATCAGCATGCACAACATCCGAGCTA 5242 Query 249164 AGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG--ATGGTATCGTACCCCTCCTTCG 249221 ||||| || || || || || || | || ||| | ||| | || || Sbjct 5243 CCAACAGCTACATTCGCGGCACCAACGGC-TC-GTCCAACGGCATCATCCCCATGCTGCG 5300 Query 249222 ATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTT 249278 || | ||| || | | | | |||||| ||| || || || || ||||| Sbjct 5301 CGTATTCAACGACACGGCGCGCTACGTGGACCAGGGCGGAGGCAAACGCAAAGGCTCGTT 5360 Query 249279 CGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAA 249338 ||| ||||||||||| ||||||||| || | || |||||||||||| || ||||| Sbjct 5361 CGCTGTGTATTTGGAACCGTGGCACGCAGACGTGTTCGAGTTCCTGGACCTGCGCAAGAA 5420 Query 249339 CAACGGCAACGAGCT-CATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 | ||||||||||| | ||| ||||||| ||| | ||||| | || |||||| | || Sbjct 5421 CCACGGCAACGAGTTGCAT-CGAGCGCGCGACTTGTTCTATGCGCTATGGGTCCCTGATC 5479 Query 249398 TGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGA 249433 |||||||| | || ||||| | ||| | |||| Sbjct 5480 TGTTCATGAAGAGGGTGGAGGCCAATGGCAAGTGGA 5515 >seq5 Length=108583 Score = 129 bits (142), Expect = 1e-24 Identities = 262/380 (69%), Gaps = 12/380 (3%) Strand=Plus/Minus Query 254004 CCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTG 254063 || || ||||| ||| |||| ||||| || |||||||| || || || ||| | || || Sbjct 77263 CCGCACTTGCTGTTCTACGGACCTCCAGGCACAGGCAAAACATCCACGATCGTCGCCGTG 77204 Query 254064 GCCCG--AACCCTGTTGGGC--GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119 | || | | || |||||| || || || | ||| | |||||||| ||||| Sbjct 77203 GGGCGCCAGCTCT-TTGGGCCGGATTTCCGCAAGAACGGTCGCTTCCTCGAGCTCAACGC 77145 Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTC 254179 || || || || || | | || || || || ||| |||||| ||| || || || Sbjct 77144 GTCCGATGATCGAGGTATCAAAGTGGTGCGTGAGAAGGTCAAGAGCTTCGCCCAGG-GTG 77086 Query 254180 GATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGA 254239 | | | || |||| | ||| || || |||||| || | | ||||||||||| || Sbjct 77085 CAATCAGCAGTGCCAATG-GACTG-CCTCCCTTCAAGATCATTGTGCTGGACGAGGCCGA 77028 Query 254240 CACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGT 254299 | ||||||| | ||| || ||||| || |||||||| | |||||||| ||||| || Sbjct 77027 CTCCATGACAGGCGATGCCCAGTCGGCACTCCGCCGCATGATGGAGAACTACTCCAAGGT 76968 Query 254300 GACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGCTTCT 254357 ||||| || ||||| | || |||||||| |||| || || | ||| |||| || Sbjct 76967 CACGCGATTCTGCCTCATCTGTAACTACGTGAGTCG--CATTATTGAGCCGGTGGCCTCG 76910 Query 254358 CGGTGCGCCAAGTTTCGATT 254377 || |||||||| || || || Sbjct 76909 CGATGCGCCAAATTCCGCTT 76890 >seq7045 Length=3816 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/208 (72%), Gaps = 12/208 (6%) Strand=Plus/Plus Query 157199 AAGTCCGCATCCAAAC--AAAACTGCTGCTTCTCACGTTCGAGCAAAACC----CCGGGC 157252 ||||| ||||| ||| ||||| ||||| ||| || | |||| ||| || | | Sbjct 2409 AAGTCGGCATCTAAAGTGAAAAC--CTGCTCCTC-CGCT---GCAACACCGACACCAGCC 2462 Query 157253 TTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATG 157312 ||| |||||| |||| | || ||||| ||||||||||||||||| | || ||||| Sbjct 2463 TTGGAGTACTCCCCCACACGCTTTTCAAAGAAGTTGGTCTTTCCCTGCAATGAGATCATA 2522 Query 157313 TCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGC 157372 |||||||| ||||| ||||| | |||||| | |||| |||||| || |||| Sbjct 2523 TCCATCCAGTCGAACGGGTTCTTGACGTTGTATATCTTGGACACACCCAGCGAGTACAGC 2582 Query 157373 CAGTAGTCCGCCACAAACTTGATGTACT 157400 || ||| || ||||||| ||||||| Sbjct 2583 AAGCGGTCAGCGACAAACTCAATGTACT 2610 >seq1 Length=128069 Score = 93.3 bits (102), Expect = 9e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| || ||||||||||| ||||| || Sbjct 111796 ACACCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGC 111737 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTT-GGCGCAGTTGTACACCTTGTCGTACCCCAG 157362 || |||||||||||||| ||||| ||||| ||| |||||| | |||| ||||| Sbjct 111736 GAGATCATGTCCATCCAGTCGAAAGGGTTCTTCGC-GTTGTAGATCTTGGAAACTCCCAG 111678 Query 157363 CTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGAT 157422 | || || | ||| ||||| |||| ||||||| |||| | | | || Sbjct 111677 CGAGTAGAGAAGGCGGTCAGCCACGAACTCAATGTACTGGCACATGAGGCCCGAGTTCAT 111618 Query 157423 ACCGATGAGCGCGACGGGAAGCG 157445 |||||||||| | || || |||| Sbjct 111617 ACCGATGAGCTCCACCGGCAGCG 111595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073435680284352