Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1885 120 2e-22 seq238 118 8e-22 SEQ15627 116 3e-21 seq321 114 1e-20 >seq1885 Length=10629 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| ||||||||||| || ||| |||| || || || || |||||||| | Sbjct 6245 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6186 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | || ||||||||| ||||| ||||| || Sbjct 6185 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 6126 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||||| |||||| |||| || || |||||||||||||| |||||||||| Sbjct 6125 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 6066 Query 45327 AGATTTGCATG 45337 |||| |||||| Sbjct 6065 AGATCTGCATG 6055 >seq238 Length=29854 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||||||||| |||||||||||| |||| || | || || Sbjct 20730 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCATCCTCG 20789 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| ||||| ||||| | || ||||||||| | Sbjct 20790 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGA 20849 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| |||||||| | | |||| |||||| |||| || ||||||||| Sbjct 20850 ATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGCTCCACGTCCAGAGTGATCGTCTTG 20909 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||||||||| || |||||| Sbjct 20910 CCGGTCAATGTCTTCACAAAAATCTGCATG 20939 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||||||||||||||||||||| |||| |||| |||| || Sbjct 20958 ACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGACCGTCCTCA 21017 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || ||||| || | ||||| ||||| || || | || |||||||| | Sbjct 21018 AGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGA 21077 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | |||| ||||| || | |||||| || || Sbjct 21078 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCACGTCGAGGGTAATAGTTTTA 21137 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| |||||||| || || || |||||| Sbjct 21138 CCCGTAAGAGTCTTGACGAAAATCTGCATG 21167 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||||||||| |||||||| ||| |||| || | || || Sbjct 21414 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCCTCG 21473 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| || || || || | || ||||||||| | Sbjct 21474 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGA 21533 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACC-CTCCACCTCCACGGTAATCGTCTT 45306 ||||| ||||| || | | | | || || |||||| || | || |||||||| Sbjct 21534 ATTTTCTGCTTGAC-GTTGTCGATCGAATCCGACGGCTCCACGTCGAGCGTGATCGTCTT 21592 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| || || |||||||||||||| ||||| || Sbjct 21593 GCCGGTGAGGGTCTTCACAAAGATCTGCATCTT 21625 >SEQ15627 Length=1670 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| ||||| |||||||||||||||||||||| |||| |||| |||| || Sbjct 1391 ACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCG 1450 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||| ||||||| || | | || ||||||||| | Sbjct 1451 AGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCCTGA 1510 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| || | | |||| |||||| || | || || |||||| Sbjct 1511 ATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTCTTG 1570 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || || || ||||||||||| |||||||| || Sbjct 1571 CCGGTGAGGGTCTTCACAAAAATTTGCATCTT 1602 >seq321 Length=26016 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||| ||| ||||||||| |||||||||||| |||| || | || || || || Sbjct 9403 GTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCATCCTCTAGCTG 9344 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||| ||||| || || | || ||||||||| |||||| Sbjct 9343 CTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATTTT 9284 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 |||||| || | | | |||| |||||| || | || || |||||||| || Sbjct 9283 TTGCTTCACGTTGTCGATGGAGTCCGACGGCTCCACGTCGAGTGTGATGGTCTTGCCGGT 9224 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||||||| ||||| ||||| ||| Sbjct 9223 CAAAGTCTTCACGAAGATCTGCATCTTG 9196 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||||||||||||||| |||| || | || || Sbjct 9864 ACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCCTCT 9805 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || |||||||| ||||| | || ||||||||| | Sbjct 9804 AGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGA 9745 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| |||||| |||| || || |||||| Sbjct 9744 ATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTTG 9685 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||||||||| |||||| Sbjct 9684 CCGGTCAACGTCTTCACAAAGATCTGCATG 9655 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||||||||||||||| |||| || | || || Sbjct 9636 ACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCCTCT 9577 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || |||||||| ||||| | || ||||||||| | Sbjct 9576 AGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGA 9517 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| |||||| |||| || || |||||| Sbjct 9516 ATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTTG 9457 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||||||||| |||||| Sbjct 9456 CCGGTCAACGTCTTCACAAAGATCTGCATG 9427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394959452719819