Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2671 86.0 1e-11 >seq2671 Length=8519 Score = 86.0 bits (94), Expect = 1e-11 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 94782 GATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAAT 94841 |||||||| ||||| || |||||||||| || || ||| || || || || || Sbjct 5220 GATGCCGATGCCTCCTGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGAT 5161 Query 94842 ACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGA-AAGTTGGGGTGTGA 94900 ||||| ||| || ||||| | | | || ||||||||||| || || | || | | Sbjct 5160 TCCCTCGATGGAGTCGTCTTGCATGGCTAGCAGGAAGCACGACGACAACTGCGGACGCGG 5101 Query 94901 CTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGAT 94960 | || || |||||||| ||||| | ||||| || || | | | ||||||||| | Sbjct 5100 C-GTGCCGGCGTTAAACAGCGTGGGCGTGGCATGCGTGAAGAACTTCTGCGACATGAGCT 5042 Query 94961 CATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAA 95020 | || || | | | | | |||||| | ||| ||||| | ||||| ||||| | Sbjct 5041 CGTACGTCTGCAGCGCCGCCTGGATGTCGGTCTTGTGGATGCCCAGCGCCACGCGCATGA 4982 Query 95021 TCATGTCCTGAGGGCGCTCAACCA 95044 |||| | ||| || ||||| |||| Sbjct 4981 TCATCTGCTGCGGCCGCTCTACCA 4958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989279208437245