Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7045 194 2e-44 >seq7045 Length=3816 Score = 194 bits (214), Expect = 2e-44 Identities = 409/606 (67%), Gaps = 7/606 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||| | || ||||| || ||||| ||| ||||| | ||| || | || || || | Sbjct 2746 ACATGAGGCAGGCGAAGTCTGTGTGCATACCTTCGTCACGACTGATCATCTCATTCGAGA 2805 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | |||| || ||||| ||||| ||||| || ||||| || ||| ||| || || | Sbjct 2806 AGCTGAGACCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAAATGCTGCAGAACGACCCCG 2865 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCTG 33752 |||||||||| ||||| |||| |||||| || | | || ||| || || | | Sbjct 2866 AAAAGAAGATACCTTCCACTGAAGCAAACGCCAGCAATCGCTCCGGGTAGGACGACACAC 2925 Query 33753 TCATGTATCCACTTTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 | || | | ||| | ||||| | || ||||||| || || || || || || | Sbjct 2926 GCGGGTCGCACCATTTCAATGCCCAGTTCGCTTTCTTTTGAACGCAGGGAATTGTCTCGA 2985 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 ||||| | ||||||||||| || | |||| || | ||| || || || | || Sbjct 2986 TGGCACGCAGCAGATAGTTTTTCTCCACAGTATCCTTGATATACGTGTCAATGAGCAGTG 3045 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 || | ||| || || ||||| |||||||| ||||| || |||||||| |||| ||| | Sbjct 3046 AGTAGACTTCGGAGTGGATGTTCTCAATGGCGATCTGGAAACCGTAGAAGCATCGAGCTT 3105 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCATC 33988 | | | ||||||||| | | || |||| || | ||||||||| || || ||||| Sbjct 3106 CAGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGATTTTCATTGACGATCCCATC 3163 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 |||||| || ||||| || | || ||||| || || | || | || ||||| Sbjct 3164 ACTGGCAGCGAAAAATGCGAGCACGTGTTTGATGAAGTGGCGCTCATTATCCGTGAGTTT 3223 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 | |||||| |||| || | | ||| | ||| || ||||||| || || || || Sbjct 3224 CTCCCAATCTTTGAGGTCGTGCACGAGATCGAGTTCCTCGGCTGTCCAGAACGAAGCTTC 3283 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 34168 || || || ||||| | ||| | || || | ||| || ||||| | || |||| ||| Sbjct 3284 CGCTTTCTTGTACATCTGCCACACATCGTGTTCTTGAATCGGGAAGAGCACGAATCGATT 3343 Query 34169 TGGATT 34174 ||||| Sbjct 3344 GGGATT 3349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629628347683920