Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq238 125 7e-24 seq321 122 9e-23 SEQ15627 114 1e-20 >seq238 Length=29854 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||| | || ||||| || || ||||| || |||||| Sbjct 20712 CCGCCGCGAAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 20771 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || |||||||| ||||||||| |||| ||||| ||||| || ||||| Sbjct 20772 AGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 20831 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||||| || || | | || | || ||| | |||||||| Sbjct 20832 ATGCCTTCCTTGTCCTGAATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGCTCCACG 20891 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||||||| || || || || || ||||| Sbjct 20892 TCCAGAGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 20938 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | ||| || || || || ||||| || || || Sbjct 21167 GCCACCACGGAGACGAAGCACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCACT 21226 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| |||||||| || ||||| |||| || || ||||| || || || Sbjct 21227 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGG 21286 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| || || || || | | || | | || | ||||| || Sbjct 21287 GATGCCTTCTTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAATCTGAAGGCTCTAC 21346 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||||||||||||| || ||||| || ||||| Sbjct 21347 ATCCAATGTGATCGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 21394 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| || || ||||| |||||||| Sbjct 21395 GCCACCACGCAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCT 21454 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | || |||||||| || ||||| |||| ||||| |||||||| || || Sbjct 21455 CAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGG 21514 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||||| || || | | || | | || | |||||||| Sbjct 21515 AATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAATCCGACGGCTCCAC 21574 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||||||| | || || || || || ||||| Sbjct 21575 GTCGAGCGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 21622 >seq321 Length=26016 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || ||||||| || ||||| || |||||||| || || || Sbjct 9883 GCCACCACGGAGACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACT 9824 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || || | || | || || ||||| || |||||| |||| || ||||| || || |||| Sbjct 9823 CAGAGTACGTCCA-TCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAG 9765 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | |||||||| ||||| || || || || | | || | || ||| | ||||||| Sbjct 9764 GGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCA 9705 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | ||||||||||||||||| || || || || ||||| Sbjct 9704 CATCCAACGTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9656 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || |||||||| || || |||| || | || | || || ||||| || || Sbjct 9624 GTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCA-TCCTCTAGCTGCTTGCC 9566 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||| || ||||| || || ||||| |||||||| ||||| || || || || Sbjct 9565 AGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTCTGCTT 9506 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || ||| | |||||||| || | || | ||||||||||||||||| Sbjct 9505 CACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTTGCCGGTCAACGT 9446 Query 139747 TTTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 9445 CTTCACAAAGATCTGCAT 9428 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | ||| ||||| || || ||||| || ||||| Sbjct 9427 GCCACCACGCAGACGAAGCACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCT 9368 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || || | || | || || ||||| || ||||| |||| || || ||||| || || | Sbjct 9367 CAGAGTACGTCCA-TCCTCTAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGG 9309 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||| ||||| |||||||| || | | || | | ||| | ||||||| Sbjct 9308 GAATTCCTTCCTTGTCCTGAATTTTTTGCTTCACGTTGTCGATGGAGTCCGACGGCTCCA 9249 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | |||||||||||||| || || ||||| || ||||| Sbjct 9248 CGTCGAGTGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 9200 >SEQ15627 Length=1670 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| ||| | || | ||||| ||| ||||| || |||||||| || ||||| Sbjct 1372 GCCACCACGTAGACGAAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 1431 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||||||||| || |||||| |||| ||||| | || || || | Sbjct 1432 CAGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTG 1491 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||||| || || | | || | | ||| | |||||||| Sbjct 1492 AATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 1551 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||| | || || || || |||||||| Sbjct 1552 GTCGAGCGTGATTGTCTTGCCGGTGAGGGTCTTCACAAAAATTTGCAT 1599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495914938968800