Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq7045 201 2e-46 >seq7045 Length=3816 Score = 201 bits (222), Expect = 2e-46 Identities = 414/608 (68%), Gaps = 11/608 (2%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| | || ||||| || ||||| ||| ||||| | ||| || | || || || | Sbjct 2746 ACATGAGGCAGGCGAAGTCTGTGTGCATACCTTCGTCACGACTGATCATCTCATTCGAGA 2805 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | |||| || ||||| ||||| ||||| || ||||| || ||| ||| || ||||| Sbjct 2806 AGCTGAGACCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAAATGCT-GCAGAACGACCCC 2864 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGC 50128 ||||||||||| ||||| |||| ||||| || | | || ||| || || | | | Sbjct 2865 GAAAAGAAGATACCTTCCACTGAAGCAAACGCCAGCAATCGCTCCGGGTAGGAC-GACAC 2923 Query 50129 TGTCATGTATCCACTTTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186 | || | | ||| | ||||| | || ||||||| || || || || || || Sbjct 2924 ACGCGGGTCGCACCATTTCAATGCCCAGTTCGCTTTCTTTTGAACGCAGGGAATTGTCTC 2983 Query 50187 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 50246 |||||| | ||||||||||| || | |||| || | ||| || || || | || Sbjct 2984 GATGGCACGCAGCAGATAGTTTTTCTCCACAGTATCCTTGATATACGTGTCAATGAGCAG 3043 Query 50247 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306 || | ||| || || ||||| |||||||| ||||| || |||||||| |||| ||| Sbjct 3044 TGAGTAGACTTCGGAGTGGATGTTCTCAATGGCGATCTGGAAACCGTAGAAGCATCGAGC 3103 Query 50307 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCG 50364 || | | ||||||||| | | || ||||| || | ||||||||| || || || Sbjct 3104 TTCAGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGATTTTCATTGACGATCCCA 3161 Query 50365 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT 50424 |||||||| || ||||| || | || ||||| || || || || || || ||| Sbjct 3162 TCACTGGCAGCGAAAAATGCGAGCACGTGTTTGATGAAGTGGCGCTCATTATCCGTGAGT 3221 Query 50425 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484 || | |||||| |||| || | | ||| | ||| || ||||||| || || || Sbjct 3222 TTCTCCCAATCTTTGAGGTCGTGCACGAGATCGAGTTCCTCGGCTGTCCAGAACGAAGCT 3281 Query 50485 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 50544 || || || || ||||| | ||| | || || | ||| || ||||| | || |||| | Sbjct 3282 TCCGCTTTCTTGTACATCTGCCACACATCGTGTTCTTGAATCGGGAAGAGCACGAATCGA 3341 Query 50545 TTTGGATT 50552 || ||||| Sbjct 3342 TTGGGATT 3349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718052969203960