Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq238 122 9e-23 SEQ15627 100 3e-16 seq321 100 3e-16 >seq238 Length=29854 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||||||| || | || ||||| || |||||| Sbjct 20742 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCATCCTCGAGCTGCTTACCA 20801 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||| ||||| || ||||| |||||||| ||||| |||||| || || Sbjct 20802 GCAAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTA 20861 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | | ||||| || || || || | ||| | |||||||||||||||||| Sbjct 20862 ACATTGTCGATTGAGTCCGACGGCTCCACGTCCAGAGTGATCGTCTTGCCGGTCAATGTC 20921 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 20922 TTCACAAAAATCTGCAT 20938 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||| || |||| |||| ||| ||||| || || ||| Sbjct 21198 GTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCA 21257 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || ||||| || || || |||||||||||||| ||| || || || Sbjct 21258 GCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATCTTCTGCTTG 21317 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || | || ||||| || | || | ||||||||||||||| || Sbjct 21318 ACGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGTCTTGCCGGTCAACGTC 21377 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 21378 TTGACGAAGATCTGCAT 21394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||||||| || | || ||||| || || ||| Sbjct 21426 GTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCCTCGAGCTGCTTGCCA 21485 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| |||||||| || || || ||||| ||||| |||||| || || Sbjct 21486 GCGAAGATAAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGAATTTTCTGCTTG 21545 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || |||| || || || || | || | |||||||||||| | || Sbjct 21546 ACGTTGTCGATCGAATCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCGGTGAGGGTC 21605 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 21606 TTCACAAAGATCTGCAT 21622 >SEQ15627 Length=1670 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| ||| | || | |||| || || || || || |||||||| ||||| Sbjct 1372 GCCACCACGTAGACGAAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 1431 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||||||| || || |||||| |||| ||||| | || || || | Sbjct 1432 CAGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTG 1491 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| |||||| || || | | || | || ||||| || || || Sbjct 1492 AATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 1551 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||| | || || || || |||||||| Sbjct 1552 GTCGAGCGTGATTGTCTTGCCGGTGAGGGTCTTCACAAAAATTTGCAT 1599 >seq321 Length=26016 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| || || |||| || || || || || |||||||| || || Sbjct 9883 GCCACCACGGAGACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACT 9824 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || || | || | || || || || || |||||| |||| || ||||| || || |||| Sbjct 9823 CAGAGTACGTCCA-TCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAG 9765 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||| ||||| ||| || || || | | || | | ||||| || || | Sbjct 9764 GGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCA 9705 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | || | |||||||||||||| || || || || || ||||| Sbjct 9704 CATCCAACGTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9656 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 || || || || || |||||||| ||||||| || | || | || || || || || || Sbjct 9396 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCA-TCCTCTAGCTGCTTGCC 9338 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 ||| |||| || || ||||| || || || || ||||| ||||| ||||||||| || Sbjct 9337 AGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATTTTTTGCTT 9278 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | | ||||| || || || || | || | |||||||||||||| || Sbjct 9277 CACGTTGTCGATGGAGTCCGACGGCTCCACGTCGAGTGTGATGGTCTTGCCGGTCAAAGT 9218 Query 143167 TTTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 9217 CTTCACGAAGATCTGCAT 9200 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 || || || || || |||||||| || |||| || | || | || || || || || || Sbjct 9624 GTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCA-TCCTCTAGCTGCTTGCC 9566 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| |||| || ||||| || || ||||| |||||||| ||||| ||| || || || Sbjct 9565 AGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTCTGCTT 9506 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | | ||||| || || || || | || | |||||||||||||| || Sbjct 9505 CACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTTGCCGGTCAACGT 9446 Query 143167 TTTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 9445 CTTCACAAAGATCTGCAT 9428 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||||||| ||||| ||||| || || || || Sbjct 10080 GTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCTAGCTGCTTGCCG 10021 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||||||| ||||| || ||||| |||||||| ||||| ||| || || || Sbjct 10020 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTC 9961 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || ||| | || || || || | || | || || || || | || Sbjct 9960 ACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGTAAGAGTC 9901 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 9900 TTCACGAAAATCTGCAT 9884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506862048510480