Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 192 9e-44 seq2671 118 2e-21 seq7045 116 5e-21 seq465 114 2e-20 seq754 100 4e-16 >seq1 Length=128069 Score = 192 bits (212), Expect = 9e-44 Identities = 605/915 (66%), Gaps = 48/915 (5%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| | | || ||| | ||| |||||||||| ||||| |||| ||||| Sbjct 110919 CTCTTCCCCATCCAGGAGCACGACGTGTGGCAAATGTACAAGAAGGCCGAGGCATCCTTC 110978 Query 125055 TGGACGGTCGAAGAGGTCGATCT-GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 ||||||| ||||||| ||||||| || || | |||| | || |||| | | | || Sbjct 110979 TGGACGGCCGAAGAGCTCGATCTAGTGCACG-ACCTCAAGGACTGGGGCAACC---TCAC 111034 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || | ||||| | || || |||| | | ||||||||||| | | ||| || || Sbjct 111035 GGATAACGAGCGCCACTTCATCAAGCACGTGCTCGCCTTCTTTGCGGCCAGCGACGGCAT 111094 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCG 125231 ||||||||| || || | | || || ||| || || | ||||||| | | Sbjct 111095 CGTCAACGAGAACTTG--GCAATGAACTTCAGCAACGAAGTGCAGGTACCAGAGGCGCGG 111152 Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 ||||| || || ||||| ||| ||||||||| | ||||| || | ||||| || Sbjct 111153 TGCTTCTATGGCTTCCAGATCGCCATTGAGAACATCCACTCCGAGGTCTACTCGCTGCTT 111212 Query 125292 ATTGACATGTACATT-----CGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCG 125346 ||||||| |||||| |||| | || | | ||| |||| | || || | Sbjct 111213 ATTGACACGTACATCAAGGACGCGGTGGAGAAGG--ACCACCTGCTGCGT---GCTATTG 111267 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 |||| | || | | | || || || || |||| | || ||| ||| Sbjct 111268 ACACCATCCCATGTGTCAAGAAGAAAGCACACTGGGCTCTCCGATGGTGCGACCCTCGTG 111327 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 ||| ||||| | || | ||| | || ||||| || || || ||||||||||| |||| Sbjct 111328 TGTCCTCGTATCCGGAGCGTCTGCTCGCCTTCGCGGCGGTGGAAGGCATCTTCTTCTCGG 111387 Query 125467 G-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | | || ||| ||||||| ||||||||||||||||| |||||||| || || | | Sbjct 111388 GCTCCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCAGTTTC 111446 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT- 125584 |||||| | || || ||||||||| | ||| ||||||||| || ||| Sbjct 111447 TCGAACGAGCTCATTAGCCGTGACGAGGGCATGCACACGGACTTTGCCTGCCTCATGTAC 111506 Query 125585 TCGCAACTATCTGCGTCC-CGAG-TGC---AGATCCAGCGATGAAAAGGTCATCAACATT 125639 ||| | || ||| | || ||| ||| || ||| || | | | || Sbjct 111507 TCGAAGCT-----CGTGAACAAGCTGCCGGAGAGCC-GCG-TGCA--------CGAGATC 111551 Query 125640 GTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCAT 125698 || ||||| ||| ||| || || |||||| | ||| || || ||||| ||| | Sbjct 111552 GTGCGTGATGCTGTGGTGATCGAGCATGAGTTTGTGCGCGATTCGCTGCCGGTGGAGC-T 111610 Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 || || ||||||| || |||||| ||||||| ||||| ||||| || || || || Sbjct 111611 CATCGGTATGAACTCGGGCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGCCTTCT 111670 Query 125759 GTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAG 125818 ||| | || | |||||| |||||||| ||||| || || || | ||| || Sbjct 111671 CTACTCGCTGGGAGTTTCCAAGATCTACAACGCGAAGAACCCTTTCGACTGGATGGACAT 111730 Query 125819 CATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACGC 125876 || || || |||| ||||||||||| ||||||||| || ||||||| | || || Sbjct 111731 GATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTACTCCAAGGC 111790 Query 125877 TACGGTGTCGGTGTC 125891 | |||||||| ||| Sbjct 111791 T--GGTGTCGGCGTC 111803 >seq2671 Length=8519 Score = 118 bits (130), Expect = 2e-21 Identities = 339/513 (66%), Gaps = 14/513 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 |||||||| ||||| |||| | | || || || |||||||| |||||||| ||| Sbjct 5332 CAGGGCGGAGGCAAACGCAAAGGCTCGTTCGCTGTGTATTTGGAACCGTGGCACGCAGAC 5391 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA-CGAGCCAGGGA 96994 || || || || | || ||||||| ||| ||| || | ||| ||||| | || Sbjct 5392 GTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGA-GTTGCATCGAGCGCGCGA 5450 Query 96995 CTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTA 97054 |||||| ||||| || ||||| || ||| ||||||||||| | || | | | |||| | Sbjct 5451 CTTGTTCTATGCGCTATGGGTCCCTGATCTGTTCATGAAGAGGGTGGAGGCCAATGGCAA 5510 Query 97055 CTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTT 97114 ||||| | | |||||| | | || ||||| | ||| |||||||| || ||||| Sbjct 5511 GTGGAGTTTGTTCTGCCCCAATGAAGCTCCGGGTCTTTACGAGTGCTGGGGAGACGAGTT 5570 Query 97115 TGAGGCCAAGTAC--ACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGC 97171 ||| | ||| || | ||||| | ||||| || ||| | || | || |||| Sbjct 5571 TGAAACGCTCTACGAACAG--TACGAAAAGGAGGGACGTGCACGCAAAACCA-TCAATGC 5627 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | |||||||| |||||| || |||||| | || || ||| |||| ||| || Sbjct 5628 GCAGCAACTGTGGTTTGCCATCTTGGACGCTCAGATTGAAACAGGAGTGCCGTTCATGCT 5687 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 ||||| || | | || ||||| ||||| | | ||||||| || |||| Sbjct 5688 TTACAAAGACGCGGCCAACCGCAAGTCGAACCAGCAGAATCTGGGCACGAT---TCGCTC 5744 Query 97292 ---CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGT 97348 ||| ||||| || | | |||||| | ||||| || || ||| || ||| Sbjct 5745 CAGCAACTTGTGCTGCGAGGTGATGGAGTACACGTCTCCAGATGAAGTGGCGGTGTGCAA 5804 Query 97349 TCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 |||| || || ||||||||||| || || Sbjct 5805 CTTGGCGTCTGTTGCCCTGCCCAAGTTCGTGGA 5837 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 || || ||||| |||||||| | ||| | | | ||| || | || || | || Sbjct 6508 TATAAAACTGTGTGGGAGATCAAGCAGAAGGCAGTACTTGATCTGTCAGCTGATCGCGGC 6567 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||| ||||||||| ||| | || | || | ||||| || || ||| Sbjct 6568 GCCTACATTTGCCAGAGTCAGTCGCTTAACATCCACATCGCCGACCCGACGATCAGCAAG 6627 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | ||||| || || |||||||| ||||| ||||| |||||||||||||||||||| Sbjct 6628 CTCACTTCCATGCATTTTTACGCCTGGAAGAAGGGACTCAAGACGGGCATGTACTA 6683 >seq7045 Length=3816 Score = 116 bits (128), Expect = 5e-21 Identities = 325/490 (66%), Gaps = 23/490 (5%) Strand=Plus/Minus Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||| || ||| | || || || |||| || || | || || || |||||||||||||| Sbjct 2921 GTCGTCCTACCCGGAGCGATTGCTGGCGTTTGCTTCAGTGGAAGGTATCTTCTTTTCGGG 2862 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | ||| ||| || || || |||||||||||||| || |||||||| || || | | Sbjct 2861 GTCGTTCTGCAGC-ATTTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGTCTCAGCTTCT 2803 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-T 125585 || ||| | || ||| ||||| || | ||| ||||| ||| || ||| | Sbjct 2802 CGAATGAGATGATCAGTCGTGACGAAGGTATGCACACAGACTTCGCCTGCCTCATGTACT 2743 Query 125586 CGCAACTATCTGCGTC--CCGAGTGC-AGATCCAGCGATGAAAAGGTCATCAACATTGTA 125642 || || | ||| | | | | ||| || || | | | |||| | Sbjct 2742 CGAAATTG-----GTCAACAAACTACCAGAA--AGTCGTGTACACGAGATCATCCG---- 2694 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATT 125702 |||||| ||| ||| ||||| ||||| | |||||| || || || |||| Sbjct 2693 --CGATGCGGTGGTGATTGAACACGAGTTCGTCTGCGAATCTCTTCCTGTGGAGTTGATC 2636 Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 |||||||||| | ||||||||| ||||||| |||||||| || || || | |||||| Sbjct 2635 GGCATGAACTCGACTCTAATGTGCCAGTACATTGAGTTTGTCGCTGACCGCTTGCTGTAC 2576 Query 125763 GAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATA 125822 | || || |||||| ||||||| |||||| || || || | ||| | || Sbjct 2575 TCGCTGGGTGTGTCCAAGATATACAACGTCAAGAACCCGTTCGACTGGATGGATATGATC 2516 Query 125823 TCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACGCTACG 125880 ||| | |||| ||||||||||| || || ||| || | ||||| | || ||| | Sbjct 2515 TCATTGCAGGGAAAGACCAACTTCTTTGAAAAGCGTGTGGGGGAGTACTCCAAGGCT--G 2458 Query 125881 GTGTCGGTGT 125890 |||||||||| Sbjct 2457 GTGTCGGTGT 2448 >seq465 Length=22214 Score = 114 bits (126), Expect = 2e-20 Identities = 258/380 (68%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 70097 TGGAGGCACTCGGGCACCAAGTATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGT 70155 ||| | |||| || ||||||| |||| ||| | ||||||| | || ||||| || Sbjct 6864 TGGCGCCACTTTGGGGCCAAGTACACAGACATGCATG-CAGACTACACTGGACAGGGCGT 6806 Query 70156 TGATCAATT-GCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCG 70214 || ||| | || || | | || ||| || ||| || |||| || ||| |||| | Sbjct 6805 GGACCAACTCGCTGA-AGTGATCCACAAGCTGCGGACGAACCCAAGTGACAGGCGGATTG 6747 Query 70215 TAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGT 70273 | | | | ||||| ||||| || || || | ||||| || || ||||||||| ||| Sbjct 6746 TCTTATCGGCGTGGAACCCTGCGGACCTGAACGAGATGGCGCTGCCTCCGTGTCACATGT 6687 Query 70274 TTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCC 70333 | | |||||| ||| | ||||| | ||||| ||| ||||| ||| | ||| Sbjct 6686 TCTG-TCAGTTCTACGTGGCTGATGGGGAGTTGTCCTGCCAGATGTACCAGCGCTCGGCC 6628 Query 70334 GACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATT 70393 || |||||||||||||| || || |||||||| ||||| || || |||| | || || Sbjct 6627 GATATGGGCCTCGGTGTTCCGTTCAACATTGCCAGCTACGCTTTGCTGACACGACTGGTT 6568 Query 70394 GCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTG 70453 || || | | || || ||| | ||||||| | || || ||||| || || ||| Sbjct 6567 GCCCAAGTAGCAGGACTAAAACCTGGCGAGTTCATCCATGTTATCGGCGATGCACATGTG 6508 Query 70454 TATTTAAATCACATCGAGCC 70473 || || || ||| | || || Sbjct 6507 TACTTGAACCACGTGGAACC 6488 >seq754 Length=17677 Score = 100 bits (110), Expect = 4e-16 Identities = 181/263 (69%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||| ||||||||| |||||| || || |||||||| | ||||||| Sbjct 8312 GAAGCCGTGGGTCAAGTGGCCTCCACTGGGCAGGTCCAGACCCATGATGCGGTCGTGCGG 8253 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | ||||||||||| |||||||| ||| ||||||||||| || || Sbjct 8252 GCGCAGCAGAGCTGTGTACACGGCGAAGTTGGCGGGCGATCCCGAGTACGGCTGCACGTT 8193 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 || ||||| | | ||||| || | | || | || |||||||| || | Sbjct 8192 GACGCCCCACTTGTCCTCGTCCAGGCCGTAGGCCGTCAGCGCGCGCTGCTGGCACAGGAT 8133 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCCTCC 127680 ||||| ||||| | ||||||||| || ||||| ||| ||| || ||||| Sbjct 8132 CTCGATCTTGTCGATCACCTCGTTACCGCCGTAGTAACGCGCGTTC--GGTAGGCCCTCA 8075 Query 127681 GAGTACTTGTTGATGAGACACGA 127703 | |||||||||| |||| ||||| Sbjct 8074 GCGTACTTGTTGGTGAGGCACGA 8052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740836520973640