Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq238 102 5e-17 seq321 96.9 2e-15 >seq238 Length=29854 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||| |||| |||||||| || || || ||||| ||| || | || | | Sbjct 20952 CGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGACCG 21011 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | |||||| ||| || || | || |||||||| | ||| |||||||| || Sbjct 21012 TCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCCTTG 21071 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| || || || | | |||| ||| |||| ||||| || || || Sbjct 21072 TCTTGAATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCACGTCGAGGGTAATA 21131 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| ||||||||||| || |||||||| |||||| Sbjct 21132 GTTTTACCCGTAAGAGTCTTGACGAAAATCTGCATG 21167 >seq321 Length=26016 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 |||||||| || || || |||||||| ||| || | || || | ||||| || Sbjct 10080 GTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCTAGCTGCTTGCCG 10021 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || || | ||| |||||||| | || |||||||| || || |||| ||| || Sbjct 10020 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTC 9961 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | | ||||| |||| || | |||||||| || || ||||| ||||||||||| Sbjct 9960 ACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGTAAGAGTC 9901 Query 33353 TTTACGAAAATTTGCATG 33370 || |||||||| |||||| Sbjct 9900 TTCACGAAAATCTGCATG 9883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318684206033022