Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7045 113 1e-19 seq238 113 1e-19 seq321 104 5e-17 >seq7045 Length=3816 Score = 113 bits (124), Expect = 1e-19 Identities = 292/437 (67%), Gaps = 15/437 (3%) Strand=Plus/Minus Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT 268915 || || ||||| || | |||||||| ||||| || |||||||| | ||| ||| | Sbjct 3184 CTCGCATTTTTCGCTGCCAGTGATGGGATCGTCAATGAAAATCTGGCCATGAACTTCAGC 3125 Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 | || || ||| | |||||||| |||| || ||||| |||||||| || || || || Sbjct 3124 AACGAAGTGCAGGTGCCTGAAGCTCGATGCTTCTACGGTTTCCAGATCGCCATTGAGAAC 3065 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAG 269035 || || || || | ||| || | || || || ||||| | |||| || | Sbjct 3064 ATCCACTCCGAAGTCTACTCACTGCTCATTGACACGTATATCAAGGATACTGTGGA---G 3008 Query 269036 AAAAGACTATTTTCTTCT----AT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAAT 269090 |||| ||||| | || | || |||| | || ||| || ||| ||| | | | Sbjct 3007 AAAA-ACTATCTGCTGCGTGCCATCGAGA-CAATTCCCTGCGTTCAAAAGAAAGCGAACT 2950 Query 269091 GGGCTCTGAAATGGATAAACGATAGCG---CGCCTTACGGAGAAAGGTTAGTTGCTTTTG 269147 |||| |||||||| || | | || | ||| || | || | || |||| Sbjct 2949 GGGCATTGAAATGGTGCGACCCGCGTGTGTCGTCCTACCCGGAGCGATTGCTGGCGTTTG 2890 Query 269148 CCGCTGTAGAAGGTATATTCTTTTCGGGGTC-TTTTGCCGCTATCTTTTGGTTGAAGAAA 269206 | | || |||||||| |||||||||||||| || ||| || || || ||| | ||||| Sbjct 2889 CTTCAGTGGAAGGTATCTTCTTTTCGGGGTCGTTCTGCAGC-ATTTTCTGGCTCAAGAAG 2831 Query 269207 AGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTA 269266 ||||||| ||||| || | | ||||| || || |||| || | ||||||||| | Sbjct 2830 CGAGGCCTCATGCCTGGTCTCAGCTTCTCGAATGAGATGATCAGTCGTGACGAAGGTATG 2771 Query 269267 CACTGCGACTTCGCTTG 269283 ||| |||||||| || Sbjct 2770 CACACAGACTTCGCCTG 2754 >seq238 Length=29854 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || || || ||||| ||||| || || |||||| || || | |||||| Sbjct 21182 AAGCACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTC 21241 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| || ||||| || || |||||||| || Sbjct 21242 CTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTC 21301 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || || || || | | ||| ||| ||||| || | ||| || | Sbjct 21302 CTGAATCTTCTGC-TTGACGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCG 21360 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || | || || || || |||||||| Sbjct 21361 TCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 21394 >seq321 Length=26016 Score = 104 bits (114), Expect = 5e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || || || | || | ||| || Sbjct 10096 AAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATC 10037 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 |||||| || || || || || || || | ||| || |||||||| || ||||| || || Sbjct 10036 TTCTAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 9977 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || ||||| || | | ||| || || || || || ||||||| Sbjct 9976 CTGAATCTTCTGC-TTCACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAG 9918 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||||| ||||| || || || || |||||||| Sbjct 9917 TTTTACCCGTAAGAGTCTTCACGAAAATCTGCAT 9884 Score = 100 bits (110), Expect = 7e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || |||||||| || |||||| ||||| | || || Sbjct 9640 AAGCACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATC 9581 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||| || || |||||||| || || | ||||| |||||||| || ||||| || || Sbjct 9580 CTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTC 9521 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || || || || | | || || || || || | || || | Sbjct 9520 CTGAATCTTCTGC-TTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGG 9462 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || | || || ||||| |||||||| Sbjct 9461 TCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9428 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || |||||| ||||| | || || ||||| || || ||| Sbjct 9852 GTTGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCCTCTAGCTGCTTGCCA 9793 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 ||||| || || | ||||| |||||||| || ||||| || ||||||||||| ||| || Sbjct 9792 GCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTCTGC-TT 9734 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | || || || || || | || || ||||| || || | || Sbjct 9733 CACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTTGCCGGTCAACGT 9674 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 9673 CTTCACAAAGATCTGCAT 9656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151043769652612