Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq440 93.3 3e-14 >seq440 Length=22882 Score = 93.3 bits (102), Expect = 3e-14 Identities = 197/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 40691 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 40750 |||||||||| | | || ||||| | ||||||| | |||||| | | | ||| Sbjct 21644 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGTCCCACGCGGTC 21703 Query 40751 GCCCCTCTCGACCCGAAAAGGGTCGCACCCAAAGTTAAACAATATGACGCCGAGGTTGCC 40810 ||| | || ||| | ||| |||| | | ||| |||| || ||||| | |||||| Sbjct 21704 GCCGCGCTTGACGGGGAAATCCTCGCTCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 21763 Query 40811 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTCCAGGGCCAGGCC 40870 | |||||||| ||| | || || || ||| || || || || | ||| || ||||| Sbjct 21764 TCGGTAGTCGGCGTCGATGACGCCAGCGCCGGTATCGATGAATTTCTTCAGAGCGAGGCC 21823 Query 40871 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTTACGGCCAGGTCCGTCTT 40930 || | || ||||| | | ||||| ||| ||||| | | ||||||||||||| Sbjct 21824 AGAGCGAGGCGCCACGCGGGCGTAGCAGCCGTCGGGCACGGCGATGACCAGGTCCGTCTT 21883 Query 40931 TACCAGGGCCCTGCCAAAGGAGGGGACCACGACCGGGTAAGCGGCCGCTAGGTC 40984 || || || ||||| | ||||| ||| | ||| ||||||| ||||| Sbjct 21884 GACGAGACCCTTGCCACCCGCGGGGATGACGGCGTCGTAGGCGGCCGAGAGGTC 21937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340037948080347