Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq238 102 7e-17 seq321 89.7 4e-13 seq1885 82.4 6e-11 >seq238 Length=29854 Score = 102 bits (112), Expect = 7e-17 Identities = 143/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||||||||| || | || || | ||||| |||||||| || || Sbjct 21431 CTCCTTCTGGATGTTGTAATC-GCTCAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGA 21489 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 | || | |||||||||||| || | | |||||||||| |||||||||||||| | Sbjct 21490 AGATAAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGT 21549 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || || | ||| | | |||| |||| || || || || |||||||| || || Sbjct 21550 TGTCG--ATCGAATCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCGGTGAGGGTCTT 21607 Query 48712 CACAAAAATCTGCATC 48727 |||||| ||||||||| Sbjct 21608 CACAAAGATCTGCATC 21623 >seq321 Length=26016 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| |||| || | || || |||||||| ||| || | Sbjct 10075 CTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCTAGCTGCTTGCCGGCGAA 10016 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| || || | | |||||||||| ||| |||||||| | | Sbjct 10015 GATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATT 9956 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || | |||| | ||| || | || || |||||||| || ||||| ||||| Sbjct 9955 GTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGTAAGAGTCTTCAC 9896 Query 48715 AAAAATCTGCAT 48726 ||||||||||| Sbjct 9895 GAAAATCTGCAT 9884 >seq1885 Length=10629 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| || | | || ||||||| |||||||| ||| || | | Sbjct 6245 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6186 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | |||||||| || ||| | | |||||||||| ||||||||||||| Sbjct 6185 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 6126 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | ||| | |||| | |||| || | || ||||| || || || || || ||||||| Sbjct 6125 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 6066 Query 48717 AAATCTGCAT 48726 | |||||||| Sbjct 6065 AGATCTGCAT 6056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421127783798039