Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq548 161 2e-35 seq261 127 3e-25 >seq548 Length=20539 Score = 161 bits (178), Expect = 2e-35 Identities = 196/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| |||| |||||| || |||||||| || ||||||||||| || ||| Sbjct 18949 GCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCATC 19008 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| || || |||||| |||| || | |||| || |||| Sbjct 19009 CGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGACG 19068 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| ||||||| ||| ||| |||| ||| | || ||| || ||| Sbjct 19069 CGCGGTGTGCTCAAGGTCTTCCTTGAGAACGTCATCCGTGACTCGGTCACCTACACGGAG 19128 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| ||||| || || || ||||||| |||| || || | || ||||| ||| Sbjct 19129 CACGCTCGCCGTAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGTCAGGGC 19188 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || || ||||| Sbjct 19189 CGTACCCTCTACGGCTTCGGCGGTTAA 19215 >seq261 Length=28552 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| ||||| || |||||||| || ||||||||||| || || Sbjct 1840 CGCTAAGCGTCACCGCAAGGTGCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1899 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || |||||||| || || |||||| |||| || | | || || |||| Sbjct 1900 TCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATTTACGAGGAGAC 1959 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || | || ||| || || Sbjct 1960 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 2019 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || || || || ||||||| |||| || || | || || || || Sbjct 2020 GCACGCGCGCCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGGG 2079 Query 16672 CCG 16674 ||| Sbjct 2080 CCG 2082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79053220974027