Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq7045 185 1e-41 >seq7045 Length=3816 Score = 185 bits (204), Expect = 1e-41 Identities = 407/606 (67%), Gaps = 7/606 (1%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||| | || ||||| || ||||| ||| ||||| | ||| || | || || || | Sbjct 2746 ACATGAGGCAGGCGAAGTCTGTGTGCATACCTTCGTCACGACTGATCATCTCATTCGAGA 2805 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | |||| || ||||| ||||| ||||| || ||||| || ||| ||| || || | Sbjct 2806 AGCTGAGACCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAAATGCTGCAGAACGACCCCG 2865 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGCTG 33474 |||||||||| ||||| |||| |||||| || | | || ||| || || | | Sbjct 2866 AAAAGAAGATACCTTCCACTGAAGCAAACGCCAGCAATCGCTCCGGGTAGGACGACACAC 2925 Query 33475 TCATGTATCCACTTTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 | || | | ||| | ||||| | || ||||||| || || || || || || | Sbjct 2926 GCGGGTCGCACCATTTCAATGCCCAGTTCGCTTTCTTTTGAACGCAGGGAATTGTCTCGA 2985 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 ||||| | ||||||||||| || | |||| || | ||| || || || | || Sbjct 2986 TGGCACGCAGCAGATAGTTTTTCTCCACAGTATCCTTGATATACGTGTCAATGAGCAGTG 3045 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 || | ||| || || ||||| |||||||| ||||| || |||||||| |||| ||| | Sbjct 3046 AGTAGACTTCGGAGTGGATGTTCTCAATGGCGATCTGGAAACCGTAGAAGCATCGAGCTT 3105 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTCCGTC 33710 | | | ||| ||||| | | || |||| |||| ||||||||| || || || || Sbjct 3106 CAGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGATTTTCATTGACGATCCCATC 3163 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 |||||| || ||||| || | || ||||| || || | || | || ||||| Sbjct 3164 ACTGGCAGCGAAAAATGCGAGCACGTGTTTGATGAAGTGGCGCTCATTATCCGTGAGTTT 3223 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 | |||||| |||| || | | ||| | ||| || ||||||| || || || || Sbjct 3224 CTCCCAATCTTTGAGGTCGTGCACGAGATCGAGTTCCTCGGCTGTCCAGAACGAAGCTTC 3283 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATT 33890 || || || ||||| | ||| | || | | ||| || ||||| | || |||| ||| Sbjct 3284 CGCTTTCTTGTACATCTGCCACACATCGTGTTCTTGAATCGGGAAGAGCACGAATCGATT 3343 Query 33891 TGGATT 33896 ||||| Sbjct 3344 GGGATT 3349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622760012153240