Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2671 315 2e-80 seq465 96.9 9e-15 >seq2671 Length=8519 Score = 315 bits (348), Expect = 2e-80 Identities = 743/1112 (67%), Gaps = 10/1112 (1%) Strand=Plus/Plus Query 363377 TCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATG 363436 ||||||| || ||||| | |||||| |||||| | |||||| | || | || | Sbjct 4892 TCGAGTACGACTACTTCGGCTTCAAGACGCTGGAGAGAGGCTACCTCTTCCGCGTGAACG 4951 Query 363437 GTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCC 363496 | | | || || || |||||||| ||| | ||||| || || | || ||||| Sbjct 4952 GCAAAGTGGTAGAGCGGCCGCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGA 5011 Query 363497 CGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCA 363554 | || | | || ||| | | || || |||| | || || || |||||||| Sbjct 5012 CCGACATCCAGGCGGCGCTGCAGACGTACGAGCTCAT--GTCGCAGAAGTTCTTCACGCA 5069 Query 363555 CGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCT 363614 |||||||| || ||| || || || || | ||| ||| |||| || ||||| || Sbjct 5070 TGCCACGCCCACGCTGTTTAACGCCGGCACGCCGCGTCCGCAGTTGTCGTCGTGCTTCCT 5129 Query 363615 TCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCT 363674 ||| ||| | ||||| ||||||||||| |||| ||||| || ||| | || || Sbjct 5130 GCTAGCCATGCAAGACGACTCCATCGAGGGAATCTACGACACGCTCAAGCAGTGCGCGTG 5189 Query 363675 TATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG 363734 || |||||| ||||| || || || | || ||||| | || || ||||| Sbjct 5190 CATCTCCAAGTGGGCAGGAGGCATCGGCATCAGCATGCACAACATCCGAGCTACCAACAG 5249 Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 |||||||||||||| || | || || || | | |||||||| || || || | Sbjct 5250 CTACATTCGCGGCACCAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGCGTATTCAA 5309 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 | | || ||| | ||||| |||||||| ||||| || |||||||| |||| ||| |||| Sbjct 5310 CGACACGGCGCGCTACGTGGACCAGGGCGGAGGCAAACGCAAAGGCTCGTTCGCTGTGTA 5369 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAA 363913 | | || || || || || | || ||||| || || || || || || ||||| || Sbjct 5370 TTTGGAACCGTGGCACGCAGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAA 5429 Query 363914 -AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATG 363972 || | || || || || || |||||||||| || ||||| |||| | || ||| Sbjct 5430 CGAGTTGCAT--CGAGCGCGCGACTTGTTCTATGCGCTATGGGTCCCTGATCTGTTCATG 5487 Query 363973 AAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTT 364032 ||| | |||||||| | || ||| | || ||||| | ||| ||| |||||| Sbjct 5488 AAGAGGGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGCCCCAATGAAGCTCCGGGTCTT 5547 Query 364033 TCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAG 364092 | ||| ||||| ||||| | || | || |||||| |||| ||| ||||||| Sbjct 5548 TACGAGTGCTGGGGAGACGAGTTTGAAACGCTCTACGAACAGTACGAAAAGGAGGGACGT 5607 Query 364093 GCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAG 364152 || || || || || || ||| | || |||||||||||| |||| | |||||||| Sbjct 5608 GCACGCAAAACCATCAATGCGCAGCAACTGTGGTTTGCCATCTTGGACGCTCAGATTGAA 5667 Query 364153 ACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCAC 364212 |||||| || | ||| | |||||||| || |||||||||||| ||||||||| | Sbjct 5668 ACAGGAGTGCCGTTCATGCTTTACAAAGACGCGGCCAACCGCAAGTCGAACCAGCAGAAT 5727 Query 364213 CTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGAC 364272 || || || |||| |||||| | || |||| | || || ||||| |||| || Sbjct 5728 CTGGGCACGATTCGCTCCAGCAACTTGTGCTGCGAGGTGATGGAGTACACGTCTCCAGAT 5787 Query 364273 GAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACT 364332 || || || || ||| | ||||| | || || || ||| || ||||||| Sbjct 5788 GAAGTGGCGGTGTGCAACTTGGCGTCTGTTGCCCTGCCCAAGTTCGTGGAAGATGGCGTG 5847 Query 364333 TTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTT 364392 || || | ||| | || || || || ||| | | || ||||||| ||||||| Sbjct 5848 TTCAACTATCAGAAACTGTACGAGGTGACCAAAGTGGTGACCCGCAATCTGAACAAGGTG 5907 Query 364393 ATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCCC 364451 || ||| || || || || | ||||| || | || || ||||| || ||||| Sbjct 5908 ATTGACGTCAACTACTACCCGGTGGTAGAAGCTCGCAAG-TCCAACATGCGCCACCGCCC 5966 Query 364452 GATTGGTCTTGGTGTACAGGGCCTCGCTGACG 364483 | || |||| |||||||| |||||||||| Sbjct 5967 TGTGGGGATTGGCGTACAGGGTCTCGCTGACG 5998 >seq465 Length=22214 Score = 96.9 bits (106), Expect = 9e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCA 111731 ||||| || || || ||||| | | || ||||| || || || ||| | | || Sbjct 6711 ATGGCGCTGCCTCCGTGTCACATGTTCTGTCAGTTCTACGTGGCTGATGGGGAGTTGTCC 6652 Query 111732 TGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGT 111791 ||||| ||||| ||||| || || ||||| || || ||||||||||| || ||||| || Sbjct 6651 TGCCAGATGTACCAGCGCTCGGCCGATATGGGCCTCGGTGTTCCGTTCAACATTGCCAGC 6592 Query 111792 TACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCATT 111851 ||||| | || || | | | || || | || || ||||| || || ||||| Sbjct 6591 TACGCTTTGCTGACACGACTGGTTGCCCAAGTAGCAGGACTAAAACCTGGCGAGTTCATC 6532 Query 111852 CACGTTATCGGAGATGCGCATGTTTACACAAACCAC 111887 || |||||||| ||||| ||||| ||| |||||| Sbjct 6531 CATGTTATCGGCGATGCACATGTGTACTTGAACCAC 6496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302952167498498