Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq321 104 2e-17 seq238 104 2e-17 SEQ15627 96.9 3e-15 seq1885 82.4 6e-11 >seq321 Length=26016 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || || |||||||| || ||||||||||| | Sbjct 9882 CCACCACGGAGACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACTC 9823 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | || ||||| ||| | || || || |||||||| ||| Sbjct 9822 AGAGTACGTCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGG 9763 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||| | ||||||||| | | | | | ||| |||||| Sbjct 9762 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACA 9703 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || ||||||| ||| || ||||| |||||||| Sbjct 9702 TCCAACGTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9656 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||| || || | ||| Sbjct 9639 AGCACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCC 9580 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| ||| | || || || |||||||| ||| | ||| || ||||| Sbjct 9579 TCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCC 9520 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||||||||| | | | | | ||| |||||| |||| |||||||| Sbjct 9519 TGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTC 9460 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| ||| || ||||| |||||||| Sbjct 9459 TTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9428 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||| ||| |||||||| || |||||||||||| || || | ||||| | || Sbjct 9402 TGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCATCCTCTAGCTGC 9343 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || || ||||| ||||| || | || || ||||| ||||| Sbjct 9342 TTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATTTTT 9283 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||||| | | | | | ||| |||||| || | |||||||| || |||||| Sbjct 9282 TGCTTCACGTTGTCGATGGAGTCCGACGGCTCCACGTCGAGTGTGATGGTCTTGCCGGTC 9223 Query 16913 AGCGTTTTGACAAAAATCTGCATTTTGT 16940 | || || || || |||||||| |||| Sbjct 9222 AAAGTCTTCACGAAGATCTGCATCTTGT 9195 >seq238 Length=29854 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || |||||||||||| || || | | ||| Sbjct 20727 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCATCC 20786 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || ||| | || || ||||| ||||| ||| | ||| || ||||| Sbjct 20787 TCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 20846 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| |||||| || | | | | | ||| |||||| |||| ||||| || Sbjct 20847 TGAATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGCTCCACGTCCAGAGTGATCGTC 20906 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| || || |||||||||||||| Sbjct 20907 TTGCCGGTCAATGTCTTCACAAAAATCTGCAT 20938 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||| |||||| ||||| || ||||||||||| || ||| ||||||| | || Sbjct 21192 TGCAACGTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCCTCGAGCTGC 21251 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || || ||||| ||||| || | ||| |||||||| ||| | | Sbjct 21252 TTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATCTTC 21311 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||||| || | | | | | || ||||| |||| ||||| || || |||||| Sbjct 21312 TGCTTGACGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGTCTTGCCGGTC 21371 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | ||| ||||| || |||||||| Sbjct 21372 AACGTCTTGACGAAGATCTGCAT 21394 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| || |||||||| || ||||||||||| | Sbjct 20940 CCACCACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTC 20999 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||| | ||| ||||| || | || || ||||| ||||| || Sbjct 21000 AGAGTGCGACCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGG 21059 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||| | ||||| || | | | | | ||| || ||| Sbjct 21060 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCACG 21119 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || ||||| || || || || ||||| ||||||||||| Sbjct 21120 TCGAGGGTAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCAT 21166 >SEQ15627 Length=1670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| || ||||| |||||||| || |||||||||||| | Sbjct 1373 CCACCACGTAGACGAAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1432 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| || | || ||||| ||| | || || ||| ||||||| | Sbjct 1433 AGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGA 1492 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| ||||| |||||| || | | | | | ||| |||||| Sbjct 1493 ATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 1552 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGCC 16944 || | ||||| || || ||||| || || || |||||||| ||||| || ||||| Sbjct 1553 TCGAGCGTGATTGTCTTGCCGGTGAGGGTCTTCACAAAAATTTGCATCTTCTAGCC 1608 >seq1885 Length=10629 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 16746 CCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAA 16805 |||| || ||||||||||| | | || | ||||||| | || ||||| || | | Sbjct 6245 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6186 Query 16806 TAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGC 16865 | || ||||| ||||| || | ||| || ||||| |||| |||||| || | | Sbjct 6185 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 6126 Query 16866 CCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAA 16925 | | ||||| |||||| |||| |||||||| || || ||||| || || |||| Sbjct 6125 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 6066 Query 16926 AAATCTGCAT 16935 | |||||||| Sbjct 6065 AGATCTGCAT 6056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404969319216610