Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value SEQ14353 122 6e-23 SEQ12598 113 3e-20 seq238 104 2e-17 seq321 89.7 3e-13 >SEQ14353 Length=1825 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 38 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 97 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 98 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 132 >SEQ12598 Length=2100 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 408 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 349 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 348 ACCAATATTTAGCTTTA 332 >seq238 Length=29854 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| |||| || || || |||||| ||||| ||||| ||| | Sbjct 20940 CCACCACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTC 20999 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || | ||| || || || || || || || || || || | |||| Sbjct 21000 AGAGTGCGACCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGG 21059 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACT-TTCAAC 38269 | |||||| ||||| ||| |||||||| || || | || | || | || ||| || Sbjct 21060 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCGATCGAGTC-CGACGGTTCCAC 21118 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||||||||||||||| | || || ||||| ||||||||| Sbjct 21119 GTCGAGGGTAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCATG 21167 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || ||||| ||| || || |||| || | || || || || || Sbjct 21204 TCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAG 21263 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || || || || | ||||| ||||||||||||| ||| || ||||| || || Sbjct 21264 ATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATCTTCTGCTTGACGTTG 21323 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || | |||| | || || || ||||| || || || || ||||| || || ||| Sbjct 21324 TCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGTCTTGCCGGTCAACGTCTTGACG 21383 Query 38307 AATATCTGCATG 38318 || ||||||||| Sbjct 21384 AAGATCTGCATG 21395 >seq321 Length=26016 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || ||||| || || | |||| | || |||| || || || || || Sbjct 9391 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCGAA 9332 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || ||||| || || || | ||| | ||||| |||||| ||||||||||||||| || Sbjct 9331 GATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATTTTTTGCTTCACGTT 9272 Query 38246 CTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCA 38304 | || | || | || || || || | ||| || || || || ||||| || |||| Sbjct 9271 GTCGATGGAGTC-CGACGGCTCCACGTCGAGTGTGATGGTCTTGCCGGTCAAAGTCTTCA 9213 Query 38305 CGAATATCTGCATGTT 38320 |||| |||||||| || Sbjct 9212 CGAAGATCTGCATCTT 9197 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 ||| || || | || || | ||| | || ||||| |||||| || || |||||||| Sbjct 10114 ATTGCCTCCACGCAGGCGAAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATC 10055 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 ||| || | || |||| || || ||||| || || || || || || || | Sbjct 10054 GCTCAATGTGCGACCATCTTCTAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGG 9995 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 || | |||||| |||||| ||| || ||||||||||| | | | || || Sbjct 9994 AGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATCGAGTCGGACGGCTC 9935 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | ||||||||||||||||| | || |||||||| ||||||||| Sbjct 9934 GACGTCCAGGGTAATAGTTTTACCCGTAAGAGTCTTCACGAAAATCTGCATG 9883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334849068739409