Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq7045 179 5e-40 >seq7045 Length=3816 Score = 179 bits (198), Expect = 5e-40 Identities = 408/607 (67%), Gaps = 9/607 (1%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| | || ||||| || ||| | ||| ||||| | ||| || | || || || | Sbjct 2746 ACATGAGGCAGGCGAAGTCTGTGTGCATACCTTCGTCACGACTGATCATCTCATTCGAGA 2805 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | |||| || ||||| ||||| ||||| || ||||| || ||| ||| || || || Sbjct 2806 AGCTGAGACCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAAATGCT-GCAGAACGACCCC 2864 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGCT 32830 |||||||| || ||||| |||| ||||| || | | || ||| || || | | Sbjct 2865 GAAAAGAAGATACCTTCCACTGAAGCAAACGCCAGCAATCGCTCCGGGTAGGACGACACA 2924 Query 32831 GTCATGTATCCACTTTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | || | | ||| | ||||| | || ||||||| || || || |||||||| Sbjct 2925 CGCGGGTCGCACCATTTCAATGCCCAGTTCGCTTTCTTTTGAACGCAGGGAATTGTCTCG 2984 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || ||| | ||||||||||| || | |||| || | ||| || ||||| | || Sbjct 2985 ATGGCACGCAGCAGATAGTTTTTCTCCACAGTATCCTTGATATACGTGTCAATGAGCAGT 3044 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || | ||| || || ||||| |||||||| || || || ||||||||||||| ||| Sbjct 3045 GAGTAGACTTCGGAGTGGATGTTCTCAATGGCGATCTGGAAACCGTAGAAGCATCGAGCT 3104 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGT 33066 || | | ||| ||||| | | || |||| || | ||||||||| || || || | Sbjct 3105 TCAGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGATTTTCATTGACGATCCCAT 3162 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 33126 ||||||| || ||||| || | || ||||| || || | || | || |||| Sbjct 3163 CACTGGCAGCGAAAAATGCGAGCACGTGTTTGATGAAGTGGCGCTCATTATCCGTGAGTT 3222 Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186 | | |||||| |||| || | | ||| | ||| || ||||||| || || || | Sbjct 3223 TCTCCCAATCTTTGAGGTCGTGCACGAGATCGAGTTCCTCGGCTGTCCAGAACGAAGCTT 3282 Query 33187 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 33246 | || || || ||||| | ||| | || || | |||||| || || | || |||| || Sbjct 3283 CCGCTTTCTTGTACATCTGCCACACATCGTGTTCTTGAATCGGGAAGAGCACGAATCGAT 3342 Query 33247 TTGGATT 33253 | ||||| Sbjct 3343 TGGGATT 3349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633441601504400