Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq321 143 2e-29 SEQ15627 134 1e-26 seq238 104 2e-17 >seq321 Length=26016 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || |||||||| |||| |||||| |||| Sbjct 9200 ATGCAGATCTTCGTGAAGACTTTGACCGGCAAGACCATCACACTCGACGTGGAGCCGTCG 9259 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | ||||| ||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 9260 GACTCCATCGACAACGTGAAGCAAAAAATTCAGGACAAGGAAGGAATTCCCCCTGACCAG 9319 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || |||| |||| || ||| || |||| ||||| Sbjct 9320 CAGCGCCTCATCTTCGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGCGACTACAAC 9379 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||| | || | ||||| Sbjct 9380 ATCCAGAAGGAGTCGACGTTGCACCTTGTGCT 9411 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || ||||||| | || |||||| |||| Sbjct 9656 ATGCAGATCTTTGTGAAGACGTTGACCGGCAAGACCATCACGTTGGATGTGGAGCCGTCG 9715 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || || ||||||| || || ||||| ||||| || || ||||||||| Sbjct 9716 GACTCAATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAA 9775 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| ||||| || |||| |||| || ||| || | || ||||| Sbjct 9776 CAACGACTCATCTTTGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGTGACTACAAC 9835 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || || ||||| Sbjct 9836 ATTCAGAAGGAGTCAACTCTTCACTTGGTGCT 9867 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || ||||||| | || |||||| |||| Sbjct 9428 ATGCAGATCTTTGTGAAGACGTTGACCGGCAAGACCATCACGTTGGATGTGGAGCCGTCG 9487 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || || ||||||| || || ||||| ||||| || || ||||||||| Sbjct 9488 GACTCAATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAA 9547 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| ||||| || |||| |||| || ||| || | || ||||| Sbjct 9548 CAACGACTCATCTTTGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGTGACTACAAC 9607 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || | ||||| Sbjct 9608 ATTCAGAAGGAGTCGACCCTCCACCTGGTGCT 9639 >SEQ15627 Length=1670 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | ||||| || | ||||| |||| |||||| |||| Sbjct 1599 ATGCAAATTTTTGTGAAGACCCTCACCGGCAAGACAATCACGCTCGACGTGGAGCCGTCG 1540 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | ||||| | ||||| ||||| ||||| ||||| |||| |||||||||| Sbjct 1539 GACTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGAATTCAACCTGACCAA 1480 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 | ||| | || ||||| ||||| || | ||||| | |||||| || |||| ||||| Sbjct 1479 CGGCGTCTCATCTTTGCTGGCAAGCAGCTCGAAGACGGTCGCACCCTGAGCGACTACAAC 1420 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || ||||| || | ||||| Sbjct 1419 ATTCAGAAGGAGTCGACGCTTCACCTGGTGCT 1388 >seq238 Length=29854 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||| || | |||||| | || || ||| | || Sbjct 21394 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACGATCACATTGGATGTAGAGCCTTCA 21335 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | ||||| | ||||| || || ||||||||||| || || |||||||| Sbjct 21334 GATTCGATCGACAACGTCAAGCAGAAGATTCAGGACAAAGAAGGCATCCCCCCTGACCAG 21275 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || || | |||||| || | || ||||| Sbjct 21274 CAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGTGACTACAAC 21215 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||||||| | || | ||||| Sbjct 21214 ATCCAGAAGGAATCCACGTTGCACCTCGTGCT 21183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433201045593785