Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7045 215 6e-51 >seq7045 Length=3816 Score = 215 bits (238), Expect = 6e-51 Identities = 592/893 (66%), Gaps = 18/893 (2%) Strand=Plus/Plus Query 92808 GTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTCA- 92866 ||| ||||| || ||||||||||| || |||||||| | ||| || ||| || || Sbjct 2468 GTACTCCCCCACACGCTTTTCAAAGAAGTTGGTCTTTCCCTGCAATGAGATCATATCCAT 2527 Query 92867 CTAGT-GATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAA-CTCGTACAATAATC 92924 | ||| || || |||||| |||| || || || || | | | | ||||| || | Sbjct 2528 CCAGTCGAACGGGTTCTTGACGTTGTA-TATCTTGGACACACCCAGCGAGTACAGCAAGC 2586 Query 92925 TATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTA 92984 ||||| ||||| || |||||||| |||| | | | ||||| || | | | Sbjct 2587 GGTCAGCGACAAACTCAATGTACTGGCACATTAGAGTCGAGTTCATGCCGATCAACTCCA 2646 Query 92985 CAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 |||| |||| ||| | ||| || | || || || || || || | ||| || Sbjct 2647 CAGGAAGAGATTCGCAGACGAACTCGTGTTCAATCACCACCGCATCGCGGATGATCTCGT 2706 Query 93045 TTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGG 93104 ||| | ||| | |||| |||| | || | | |||||| | ||| || ||||| | Sbjct 2707 GTACACGACTTTCTGGTAGTTTGTTGACCAATTTCGAGTACATGAGGCAGGCGAAGTCTG 2766 Query 93105 TATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTC 93164 | || | ||||||||| || |||| |||||| ||| | | ||| || | || | Sbjct 2767 TGTGCATACCTTCGTCACGACTGATCATCTCATTCGAGAAGCTGAGACCAGGCATGAGGC 2826 Query 93165 CTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA-GaaaaaaaTATACCTTCCACG 93223 |||| ||||||||||| || || | ||| ||| ||| ||||| || ||||||||||| Sbjct 2827 CTCGCTTCTTGAGCCAGAAAAT-GCTGCAGAACGACCCCGAAAAGAAGATACCTTCCACT 2885 Query 93224 GCTGCAAATGCCA-CAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC----CATT 93278 | ||||| |||| |||| | ||| | | || || || | || |||| Sbjct 2886 GAAGCAAACGCCAGCAATCGCTCCGGGTAG----GACGACACAC-GCGGGTCGCACCATT 2940 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 | || ||||| | ||||| || | || || || | ||| ||||| || | || | Sbjct 2941 TCAATGCCCAGTTCGCTTTCTTTTGAACGCAGGGAATTGTCTCGATGGCACGCAGCAGAT 3000 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 | | | ||| | | ||| || || || || || | ||| || || | ||| || | Sbjct 3001 AGTTTTTCTCCACAGTATCCTTGATATACGTGTCAATGAGCAGTGAGTAGACTTCGGAGT 3060 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 ||| ||||| || || || ||||| |||||||| |||| |||||| | | |||||||| Sbjct 3061 GGATGTTCTCAATGGCGATCTGGAAACCGTAGAAGCATCGAGCTTCAGGCACCTGCACTT 3120 Query 93459 C-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 | ||| || | || | |||||||||||||| || ||||| || || ||||| Sbjct 3121 CGTTGCTGAAGT-TCATGGCCAGATTTTCATTGACGATCCCATCACTGGCAGCGAAAAAT 3179 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGA 93577 || | | || || || || || ||||| ||| | || || |||||||| || Sbjct 3180 GCGAGCACGTGTTTGATGAAGTGGCGCTCATTATCCGTGAGTTTCTCCCAATCTTTGAGG 3239 Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATA 93637 || | ||||||| ||| ||| | ||||| ||||| ||||| ||||| |||||||| Sbjct 3240 TCGTGCACGAGATCGAGTTCCTCGGCTGTCCAGAACGAAGCTTCCGCTTTCTTGTACATC 3299 Query 93638 TCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 | ||| | || || | |||||| || || | || || ||||| || || || Sbjct 3300 TGCCACACATCGTGTTCTTGAATCGGGAAGAGCACGAATCGATTGGGATTCTC 3352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556693470290360