Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq238 123 2e-23 seq2671 116 3e-21 SEQ15627 113 4e-20 seq321 104 2e-17 >seq238 Length=29854 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || || | ||||| || ||| |||| || || ||||| | Sbjct 21625 AAGATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACGATCACGCTCGACGTGGAGCCG 21566 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| | | ||| | |||| || |||||||| |||||||| || ||||| || ||| Sbjct 21565 TCGGATTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGAATTCCCCCTGAT 21506 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || |||||||| || || ||||| ||| | |||||| ||| || | ||||||| Sbjct 21505 CAGCAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTGAGCGATTAC 21446 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || || ||| Sbjct 21445 AACATCCAGAAGGAGTCGACC 21425 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || |||||||| | || || || |||||| | | Sbjct 21166 ATGCAGATTTTCGTCAAGACTCTTACGGGTAAAACTATTACCCTCGACGTGGAACCGTCG 21107 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| |||||||||||||| || || || || || || Sbjct 21106 GACTCGATCGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGCATCCCCCCTGACCAG 21047 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| || | ||||| ||||| | || |||||| Sbjct 21046 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGTCGCACTCTGAGTGACTACAAC 20987 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | || | ||| |||| |||| || || Sbjct 20986 ATTCAGAAGGAGTCGACCCTGCACCTGGTTCTGCGTCTGCGTGGTGG 20940 >seq2671 Length=8519 Score = 116 bits (128), Expect = 3e-21 Identities = 290/435 (67%), Gaps = 9/435 (2%) Strand=Plus/Minus Query 129972 CGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAA 130031 ||| | |||| || || | |||||||||| | |||| || || || | ||||| || Sbjct 5541 CGGAGCTTCATTGGGGCAGAACAAACTCCACTTGCCATTGGCCTCCACCCTCTTCATGAA 5482 Query 130032 CAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTT--TTCTATCCTCGGCACCC 130089 || ||| || ||||| || || || ||||| || |||||| | | | |||| || Sbjct 5481 CAGATCAGGGACCCATAGCGCATAGAACAAGTCGCGCGCTCGATGCAA--CTCGTTGCCG 5424 Query 130090 ATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATT 130149 ||| ||| || ||||| ||| | | ||| |||||||||||||| | ||| | Sbjct 5423 TGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCTGCGTGCCACGGTTCCAAATACACA 5364 Query 130150 GCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAG 130206 || | | ||| || |||||| || || ||||| |||| |||| | | | |||| | Sbjct 5363 GCGAACGAGCCTTTGCGTTTGCCTCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAAT 5304 Query 130207 ACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCA 130266 || |||| ||| | | ||||||| || |||||| |||| |||| | ||| Sbjct 5303 ACGCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTGGTGCCGCGAATGTAGCTGTTG 5244 Query 130267 CGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCG 130326 ||| || | ||| || | ||| | || ||||| || | | || || || ||||| Sbjct 5243 GTAGCTCGGATGTTGTGCATGCTGATGCCGATGCCTCCTGCCCACTTGGAGATGCACGCG 5184 Query 130327 CAATCGCGT-AGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAA 130385 || | || | ||||| || || || || |||| ||| |||| ||| ||| ||||| Sbjct 5183 CACT-GCTTGAGCGTGTCGTAGATTCCCTCGATGGAGTCGTCTTGCATGGCTAGCAGGAA 5125 Query 130386 ACACGAGGCCAATTG 130400 ||||| | ||| || Sbjct 5124 GCACGACGACAACTG 5110 >SEQ15627 Length=1670 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||||||||| || || | ||||| || || |||| || || ||||| | Sbjct 1602 AAGATGCAAATTTTTGTGAAGACCCTCACCGGCAAGACAATCACGCTCGACGTGGAGCCG 1543 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| | |||| || |||||||| |||||||| || |||| ||| || Sbjct 1542 TCGGACTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGAATTCAACCTGAC 1483 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||| ||||| || ||||| ||||| ||| | || || |||||| | ||| ||| Sbjct 1482 CAACGGCGTCTCATCTTTGCTGGCAAGCAGCTCGAAGACGGTCGCACCCTGAGCGACTAC 1423 Query 22396 AACATTCAAAAAGAATCCAC 22415 |||||||| || || || || Sbjct 1422 AACATTCAGAAGGAGTCGAC 1403 >seq321 Length=26016 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || ||||| ||||| || || |||| || || ||||| | Sbjct 9197 AAGATGCAGATCTTCGTGAAGACTTTGACCGGCAAGACCATCACACTCGACGTGGAGCCG 9256 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | ||| | | || ||||||||||| |||||||| || ||||| || || Sbjct 9257 TCGGACTCCATCGACAACGTGAAGCAAAAAATTCAGGACAAGGAAGGAATTCCCCCTGAC 9316 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || || ||||| ||| |||||||| || || | ||| ||| Sbjct 9317 CAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGCGACTAC 9376 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 9377 AACATCCAGAAGGAGTCGAC 9396 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || |||||||| | || || || || || | || Sbjct 9884 ATGCAGATTTTCGTGAAGACTCTTACGGGTAAAACTATTACCCTGGACGTCGAGCCGTCC 9943 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| || | || || || ||||| |||||||| || ||||| || || || Sbjct 9944 GACTCGATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAG 10003 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| |||| ||| ||||| | |||||||||| Sbjct 10004 CAGCGTCTGATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGCACATTGAGCGATTACAAC 10063 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 10064 ATCCAGAAGGAGTCGAC 10080 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || || |||| | || ||||| | | Sbjct 9428 ATGCAGATCTTTGTGAAGACGTTGACCGGCAAGACCATCACGTTGGATGTGGAGCCGTCG 9487 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || ||||| |||||||| || || || || || ||| Sbjct 9488 GACTCAATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAA 9547 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| ||||| ||| |||||||| || || | || |||||| Sbjct 9548 CAACGACTCATCTTTGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGTGACTACAAC 9607 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 9608 ATTCAGAAGGAGTCGACC 9625 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || || |||| | || ||||| | | Sbjct 9656 ATGCAGATCTTTGTGAAGACGTTGACCGGCAAGACCATCACGTTGGATGTGGAGCCGTCG 9715 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || ||||| |||||||| || || || || || ||| Sbjct 9716 GACTCAATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAA 9775 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| ||||| ||| |||||||| || || | || |||||| Sbjct 9776 CAACGACTCATCTTTGCTGGCAAGCAGCTAGAGGATGGACGTACTCTGAGTGACTACAAC 9835 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || || || || | || || || |||| Sbjct 9836 ATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCG 9870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419605030058035