Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq96 183 6e-41 seq1 159 7e-34 seq696 98.7 2e-15 SEQ10534 89.7 1e-12 >seq96 Length=42084 Score = 183 bits (202), Expect = 6e-41 Identities = 663/1018 (65%), Gaps = 31/1018 (3%) Strand=Plus/Minus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 || ||||| |||| || |||||||| || || ||||| | ||||||||| ||| || Sbjct 21362 GACCTGTGCAACTGCGAGTTCTCGCTTGCTTACGGTGGTATGATTCTGCTCAACAACGCC 21303 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 || || | |||||||||| |||| || ||||| ||||||||| || |||||| Sbjct 21302 CGTCTTCGCCTCAAGCGTGGACACCGTTACGGTCTGTGCGGTCCCAACGGTTGTGGTAAG 21243 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGAG 279530 || || ||||||||||| | ||||| ||||| || || || || | | ||| Sbjct 21242 TCGACCCTCATGCGCGCCATCTCGAACGGCCAGCTTGAGGGCTTCCCCAGCCGTGACGAG 21183 Query 279531 GTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTTC 279590 | | ||| |||| || |||||| || | | | || | || | ||||| | Sbjct 21182 CTGAAGACTGTGTTCGTTGAGCACAACCTGCAGGCTTCGGAGGCTGAGCTCTCTGTGGTG 21123 Query 279591 GACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCC-TGAGGAAATCATCCA 279649 |||||| | | | || | || | | | ||| || | | || |||| || | Sbjct 21122 GACTTC--ATCCT-TGCCGATGACGACCT-GAAGTCGACGCCCCGCAAGGAGGTCGAGGA 21067 Query 279650 GAAACTGGAGGCCAATGGTTTTGATGAAAGAATGCGTAATCTGCCAGTAGGTTCTCTGTC 279709 | || | | || || | |||| | | | || || | || || Sbjct 21066 CACTCTTGCTGGTGTCGGCTTCACCGCCGAGATGCAGGCCCAGGCCGTTGGCACGCTTTC 21007 Query 279710 GGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCT 279769 |||||||||||||||||| ||| || | || || || || | | ||||| | || Sbjct 21006 GGGTGGTTGGAAGATGAAATTGGAGCTGGCCCGTGCTATGCTGCAGAAGGCCGACATTCT 20947 Query 279770 ACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTA 279829 || ||||||||||| || |||||| |||| || ||||| |||||||| | | ||| Sbjct 20946 GCTTCTTGATGAGCCGACGAACCACTTGGATGTCAAGAACGTTGCCTGGCTCGAGAACTA 20887 Query 279830 CCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGA 279889 ||| ||||| |||| || || | ||| |||| || || ||||||||||||||||| || Sbjct 20886 CCTGACCAGCCTGACCAACGTGACCTCCATCATGGTGTCCCACGACTCTGGCTTCCTCGA 20827 Query 279890 TGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCACAT 279946 | || ||| | |||||||||||| ||| | || |||||| ||| |||| Sbjct 20826 CACGGTCTGCACGAACATCATTCACTACGAGACCCGTAAGCTGAAGATCTACAAG----- 20772 Query 279947 CGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAA 280006 || ||||| || ||||||| || |||||||| |||||||| || || | Sbjct 20771 -GGTAACCTCTCCAAGTTCGTGGAGCAGAAGCCTGAGGCCAAGGCCTACTACGAACTCGA 20713 Query 280007 GGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACATCAA 280065 | | | || |||| ||||| ||||| || || || | | |||| | | ||| Sbjct 20712 GTCGGAGAACGTGAAGTTCACGTTCCCGGAGCCTGGTTTCCTTGCTGACATCAAGAACAA 20653 Query 280066 AGGATCGCGCAATCATGAAGCT-CCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCAA- 280123 || || | ||||| || || || || | || || || |||||| Sbjct 20652 GGGTAAGC-CCATCATTCGTCTGACGAACTGT-TCGTACCAGTACCCGGGTGCCCCCAAG 20595 Query 280124 -CATC-TTCAGCAGTGTCAACTCGCAGGT---TTCTAT-GAACTCACGGATTGGTGTCAT 280177 | || ||| || || | | | || ||| | || | || || | || | Sbjct 20594 CCGTCGATCAACAACATCTCCGTG-ACGTGCGCTCTGTCGAGC---CGTATCGCCGTGCT 20539 Query 280178 TGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGC 280237 |||||||| ||||| |||||||| || || ||||| | ||||| || ||| || | Sbjct 20538 GGGACCCAACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACGGGTGAGGTGGAGCC 20479 Query 280238 CACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACG 280296 ||| || |||| || |||||||| || |||||| | || ||||| |||||||||| Sbjct 20478 GACT-AGCGGTCAGGTGTGGAAGCACCCTGCCATGCGTTTCGCCTACGTGGCTCAGCACG 20420 Query 280297 CTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 ||||||||||||| ||| ||||| ||| ||| | ||||| ||||| |||||||| Sbjct 20419 CTTTCCACCACATTGAGTCTCACCTTGACGAGACGGCCAACCAGTACATCCAGTGGCG 20362 >seq1 Length=128069 Score = 159 bits (176), Expect = 7e-34 Identities = 552/855 (65%), Gaps = 17/855 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||| ||||||| ||||| | Sbjct 111763 TCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAAAGGGTTCTTC 111704 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | || || | || | |||||| ||||| ||||| | Sbjct 111703 GCGTTGTAGATCTTGGAAACTCCCAGCGAGTAGAGAAGGCGGTCAGCCACGAACTCAATG 111644 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-----CGACAAGGAATTGCCTCAC 251737 ||||| | ||| || | |||||||| || || | || || |||| || ||| Sbjct 111643 TACTGGCACATGAGGCCCGAGTTCATACCGATGAGCTCCACCGGCAGCGAATCGCG-CAC 111585 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAG 251797 | || || | ||| | | || || || ||| || | | ||| | | | Sbjct 111584 A----AACTCATGCTCGATCACCACAGCATCACGCACGATCTCGTGCACGCGGCTCTCCG 111529 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 |||||||||| | ||||| ||||||| ||| | |||| | ||||| ||||||| Sbjct 111528 GCAGCTTGTTCACGAGCTTCGAGTACATGAGGCAGGCAAAGTCCGTGTGCATGCCCTCGT 111469 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | || || |||| |||||| || | || || || ||||| | || || ||| |||||| Sbjct 111468 CACGGCTAATGAGCTCGTTCGAGAAACTGAGACCCGGCATGAGACCGCGCTTCTTGAGCC 111409 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| | ||| ||||| || ||||| | | || || || | | | || | | Sbjct 111408 AGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCTTCCACCGCCGCGAAGGCGAGCA 111349 Query 251978 GGCGCTCAGCAAACGACTTGTCCTGCGACAAG-AACTTC--TGTGCCCATGCTGCCTTCT 252034 | ||||| | | |||| | | | | | | || | ||||| ||| |||| Sbjct 111348 GACGCTCCGGATACGAGGACACACGAGGGTCGCACCATCGGAGAGCCCAGTGTGCTTTCT 111289 Query 252035 TTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCT 252094 | || ||||| || || || ||| | || || | ||| | |||||| Sbjct 111288 TCTTGACACATGGGATGGTGTCAATAGCACGCAGCAGGTGGTCCTTCTCCACCGCGTCCT 111229 Query 252095 CGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCT 252154 |||| || |||| || || ||||| | ||| || |||||| || || |||| Sbjct 111228 TGATGTACGTGTCAATAAGCAGCGAGTAGACCTCGGAGTGGATGTTCTCAATGGCGATCT 111169 Query 252155 GGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAA 252214 || | ||||||| ||||| || | ||||| || ||||| |||| | Sbjct 111168 GGAAGCCATAGAAGCACCGCGCCTCTGGTACCTGCACTTCGTTGCTGAAGTTCATTGCCA 111109 Query 252215 TGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGT 252274 |||||| | || ||||| |||||| | ||||||||| | || | | ||||||||||| Sbjct 111108 AGTTCTCGTTGACGATGCCGTCGCTGGCCGCAAAGAAGGCGAGCACGTGCTTGATGAAGT 111049 Query 252275 GACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTT 252334 | ||||| | || |||| ||| | |||||| | ||| || ||| | | Sbjct 111048 GGCGCTCGTTATCCGTGAGGTTG---CCCCAGTCCTTGAGGTCGTGCACTAGATCGAGCT 110992 Query 252335 CTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGTACT 252394 |||| |||||||||| | | | | ||||||||||||||| |||| || | | || Sbjct 110991 CTTCGGCCGTCCAGAAGGATGCCTCGGCCTTCTTGTACATTTGCCACACGTCGTGCTCCT 110932 Query 252395 TGATTGGGAA-AGCA 252408 ||| ||||| |||| Sbjct 110931 GGATGGGGAAGAGCA 110917 >seq696 Length=18305 Score = 98.7 bits (108), Expect = 2e-15 Identities = 204/301 (68%), Gaps = 6/301 (2%) Strand=Plus/Plus Query 218654 TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGC 218713 ||||||| || || | |||| || || || ||| ||| | ||||| || || |||| Sbjct 7607 TTAAGGTTGCACAACTGGCTGGCTACGTGTCTGAACATTCAGCATACCACCATGGCGAGC 7666 Query 218714 AGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGA 218773 ||||| |||||||| ||||| ||||||||||||| ||||| || |||||| | Sbjct 7667 AGAGTTTGCAGGGTTGTATTGTGAATATGGCACAGGACTTCGTGGGAAGCAACAACGTCC 7726 Query 218774 ACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTT 218833 || | || || | ||| ||||||||| | ||| || |||| || || ||| || Sbjct 7727 ACCTTCTATCTCCGATCGGCCAGTTTGGTACGCGTTTAATGGGCGGTAAAGATGCAGCCA 7786 Query 218834 CTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAA---TCAGG 218890 | | ||||| || ||||| ||| | | ||||| | ||| | | | | Sbjct 7787 GCTCTCGTTATATTTTCACAAACTTGGAACAGCTTACGCGTCGATTGTACGACCCACTTG 7846 Query 218891 CCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGT 218950 | ||||| || || |||||||| || || |||||| ||||||||||| || |||| Sbjct 7847 ACAATGAT-TG--TCTAAAGTATCTGGATGAAGATGGTCAGTCGATTGAGCCAGAATGGT 7903 Query 218951 A 218951 | Sbjct 7904 A 7904 >SEQ10534 Length=2552 Score = 89.7 bits (98), Expect = 1e-12 Identities = 62/70 (89%), Gaps = 4/70 (6%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAAT----CTAGTGGTCGTGGGTT 142558 |||||| |||||||||||||||||||| ||||||||||| || ||||||||||||| Sbjct 1213 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGCTTGTGGTCGTGGGTT 1272 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 1273 CGAGCCCCAC 1282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027520226586799