Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq321 145 6e-30 seq238 138 1e-27 SEQ15627 107 2e-18 >seq321 Length=26016 Score = 145 bits (160), Expect = 6e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||||||||||| || ||| |||||| || || || || Sbjct 10080 GTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCTAGCTGCTTGCCG 10021 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| |||||||||||||| ||||| |||||| || || Sbjct 10020 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTC 9961 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| | ||||| | |||||||||| ||| | ||||| || || ||||| Sbjct 9960 ACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGTAAGAGTC 9901 Query 114366 TTTACAAAAATCTGCATG 114383 || || |||||||||||| Sbjct 9900 TTCACGAAAATCTGCATG 9883 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || || || | || || || || ||||||||||| || Sbjct 9885 ATGCCACCACGGAGACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCA 9826 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| |||||| ||| || || || || ||||| ||||||| || |||||||| ||| Sbjct 9825 CTCAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGA 9766 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||| || || | | |||| | ||| | | || Sbjct 9765 GGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCC 9706 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | || |||||||||| || || ||||| ||||||||| Sbjct 9705 ACATCCAACGTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCATG 9655 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| || |||| |||||| ||| || || || || ||| Sbjct 9624 GTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCCTCTAGCTGCTTGCCA 9565 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| || |||||||| ||||| |||||||| ||||| |||||| || || Sbjct 9564 GCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTC 9505 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| | ||| | | || || |||| || | || |||||||||| || Sbjct 9504 ACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTTGCCGGTCAACGTC 9445 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 9444 TTCACAAAGATCTGCATG 9427 >seq238 Length=29854 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || ||| | || | || || || || ||||||||||| || Sbjct 20937 ATGCCACCACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCA 20996 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| ||| ||| || |||||||| || |||||| ||||||| ||||| ||||| || Sbjct 20997 CTCAGAGTGCGACCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGG 21056 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| ||||||||| || | | || | | ||| | | ||| Sbjct 21057 GGGATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCC 21116 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||| | ||| | ||||| || || ||||| || || |||||||||||| Sbjct 21117 ACGTCGAGGGTAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCATG 21167 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||||||| ||||| ||| || || || |||||| Sbjct 20742 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCATCCTCGAGCTGCTTACCA 20801 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| ||||| ||||| |||||||| ||||| ||| || || || Sbjct 20802 GCAAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTA 20861 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | | ||| | | || ||||||| || | ||| |||||||||| || Sbjct 20862 ACATTGTCGATTGAGTCCGACGGCTCCACGTCCAGAGTGATCGTCTTGCCGGTCAATGTC 20921 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||||||||||||| Sbjct 20922 TTCACAAAAATCTGCATG 20939 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| ||||| || || |||||||| || |||| || ||| || || || || || || Sbjct 21197 CGTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCCTCGAGCTGCTTGCC 21256 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 |||| ||||||| ||||| ||||| || || |||||||||||||| |||||| || || Sbjct 21257 AGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATCTTCTGCTT 21316 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | | || | | || || |||| || | ||| |||||||||| || Sbjct 21317 GACGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGTCTTGCCGGTCAACGT 21376 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 21377 CTTGACGAAGATCTGCATG 21395 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||||||||||| ||||| ||| || || || || ||| Sbjct 21426 GTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCCTCGAGCTGCTTGCCA 21485 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| || || || ||||| ||||| ||||| ||| || || || Sbjct 21486 GCGAAGATAAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGAATTTTCTGCTTG 21545 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | | || | | || ||||| | || | ||| |||||||| || || Sbjct 21546 ACGTTGTCGATCGAATCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCGGTGAGGGTC 21605 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 21606 TTCACAAAGATCTGCAT 21622 >SEQ15627 Length=1670 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || |||||||| | | || | || | ||| || || || ||||||||||| |||||| Sbjct 1373 CCACCACGTAGACGAAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1432 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| ||||| || || || ||||| ||||||||||| ||||||| || || Sbjct 1433 AGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGA 1492 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| ||||| ||| || || || | | || | | ||| | | || ||| Sbjct 1493 ATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 1552 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || |||||||| || || || |||||||| ||||| Sbjct 1553 TCGAGCGTGATTGTCTTGCCGGTGAGGGTCTTCACAAAAATTTGCAT 1599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420011310992868