Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 345 8e-90 seq2671 237 3e-57 seq7045 233 4e-56 >seq1 Length=128069 Score = 345 bits (382), Expect = 8e-90 Identities = 603/865 (70%), Gaps = 17/865 (2%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || | || ||| | ||| |||||||||||||| || ||| |||||| ||| Sbjct 110928 ATCCAGGAGCACGACGTGTGGCAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACGGCC 110987 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 || ||| | || || | | ||| | ||||| || | || ||||| Sbjct 110988 GAAGAGCTCGATCTAGTGCACGACCTCAAGGACTGGGGCAACCTCACGGATAACGAGCGC 111047 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| |||| || | || |||||||| || ||| |||||||| ||||| |||||| Sbjct 111048 CACTTCATCAAGCACGTGCTCGCCTTCTTTGCGGCCAGCGACGGCATCGTCAACGAGAAC 111107 Query 42465 CTGGCCACCAGGTTCATGAAAGAGGTGCAG-TACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 |||| | | |||| || || |||||| ||| |||||||| |||||||| ||||| Sbjct 111108 TTGGCAATGAACTTCAGCAACGAAGTGCAGGTACCA-GAGGCGCGGTGCTTCTATGGCTT 111166 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTA 42580 |||||| ||||| |||||| | ||||| ||||| ||| | ||||| | ||||||| Sbjct 111167 CCAGATCGCCATTGAGAACATCCACTCCGAGGTCTACTCG---CTGCTTATTGACACGTA 111223 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 |||| ||| | || ||| || ||| | || || || || || || || | Sbjct 111224 CATCAAGGACGCGGTGGAGAAGGACCACCTGCTGCGTGCTATTGACACCATCCCATGTGT 111283 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT-TCGGCG 42699 ||||||||| || ||||||| ||| ||| ||| || | | ||| || | | Sbjct 111284 CAAGAAGAAAGCACACTGGGCTCTCCGATGGTGCGACCCTCGTGTGTCCTCGTATCCG-G 111342 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 || | ||| | ||||| | || || || |||||||||||||||||| ||||| ||||| Sbjct 111343 AGCGTCTGCTCGCCTTCGCGGCGGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCCA 111402 Query 42760 TCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 |||||||||||||| || ||| || ||||| || |||| ||||||||||| ||||| Sbjct 111403 TCTTCTGGCTCAAGAAGCGCGGTCTC-ATGCCGGGTCTCAGTTTCTCGAACGAGCTCATT 111461 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGG 42878 ||| | |||||||| |||| | |||||||||||||||| ||| ||||| | ||| | Sbjct 111462 AGCCGTGACGAGGGCATGCACACGGACTTTGCCTGCCTCATGTACTCGA---AGCTCGTG 111518 Query 42879 CACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAG 42938 |||||| || || || || | | ||| | || || |||| ||||||| | Sbjct 111519 AACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCGTGATGCTGTGGTGATCGAGCAT 111578 Query 42939 GAGTTCCT-CACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTG 42997 ||||| | | || | |||||||| ||| || |||| |||||| | ||||||||| Sbjct 111579 GAGTTTGTGCGCG-ATTCGCTGCCGGTGGAGCTCATCGGTATGAACTCGGGCCTCATGTG 111637 Query 42998 CAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTA 43057 | ||||||| ||| ||| || |||| || || | | | |||| | | |||| Sbjct 111638 CCAGTACATTGAGTTCGTGGCTGACCGCCTTCTCTACTCGCTGGGAGTTTCCAAGATCTA 111697 Query 43058 CAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTT 43117 |||| || | ||| ||||||| ||||| | |||||| || |||||||||||||||| Sbjct 111698 CAACGCGAAGAACCCTTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTT 111757 Query 43118 TTTCGAGAAGCGCGTCGCCGACTAC 43142 ||||||||||| || | ||| ||| Sbjct 111758 CTTCGAGAAGCGTGTGGGCGAGTAC 111782 >seq2671 Length=8519 Score = 237 bits (262), Expect = 3e-57 Identities = 715/1095 (65%), Gaps = 32/1095 (3%) Strand=Plus/Minus Query 244396 GGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT 244455 ||| |||||||| || ||||||||||| ||||||||| |||||||| || ||| Sbjct 6084 GGCAGCGTAGTAAATCGTCTCGAAGATGTTCTTGTTCAGCTCGCGGGCGTTCTCGCTCTC 6025 Query 244456 GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGG 244515 ||| ||| | ||| | ||||| |||| || || ||||| ||||| || || | || Sbjct 6024 GAACGGGTAGTTCATTAGAATGAACGCGTCAGCGAGACCCTGTACGCCAATCCCCACAGG 5965 Query 244516 TCTGTGTCGCTTGTTGGAGCGCATG---GCTTCGGGCACGGGGTAAAAGTTGCCGTCGAT 244572 | ||| ||| ||||||| | || ||||| ||| ||||| ||||| |||| || Sbjct 5964 GCGGTGGCGCATGTTGGA---CTTGCGAGCTTCTACCACCGGGTAGTAGTTGACGTCAAT 5908 Query 244573 CACCTTGTTGAGGTTGCGGGTGATCA-TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGT 244631 ||||||||| || |||||||| | || | || | || ||| ||| |||| ||| | Sbjct 5907 CACCTTGTTCAGATTGCGGGTCACCACTTTGGTC-ACCTCGTACAGTTTCTGATAGTTGA 5849 Query 244632 ACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCA 244691 || || ||| || ||| |||| | ||||| || |||| Sbjct 5848 ACACGCC---ATCTTC---------------CACGAACTTGGGCAGGGCAACAGACGCCA 5807 Query 244692 GGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTAC 244751 |||||| || ||||| || || | ||||||| | | |||| ||| | ||| | Sbjct 5806 AGTTGCACACCGCCACTTCATCTGGAGACGTGTACTCCATCACCTCGCAGCACAAGTTGC 5747 Query 244752 TGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGA 244811 || | || |||||||| | ||| || || |||||| |||| ||||| ||||| | Sbjct 5746 TGGAGCGAATCGTGCCCAGATTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCTTTGTAAA 5687 Query 244812 GCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAG 244871 ||||||| ||| | || || || | ||| ||| | | || | ||| || | | | Sbjct 5686 GCATGAACGGCACTCCTGTTTCAATCTGAGCGTCCAAGATGGCAAACCACAGTTGCTGCG 5627 Query 244872 CCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACT 244931 | |||| || |||| || ||||| ||||| | ||| || | || |||| Sbjct 5626 CATTGATGGTTTTGCGTGCACGTCCCTCCTTTTCGTACTGTTCGTAGAGCGTTTCAAACT 5567 Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGG-GCACGACGCCGGGCACATGAGACTCCACTCG 244990 || |||||| ||||| || || || || | ||||| | | |||||||| | Sbjct 5566 CGTCTCCCCAGCACTCGTAAAGACCCGGAGCTTCATTG-GGGCAGAACAAACTCCACTTG 5508 Query 244991 CCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCC 245050 || | ||| ||||||| |||||| || || |||| ||| || || | ||| | ||| Sbjct 5507 CCATTGGCCTCCACCCTCTTCATGAACAGATCAGGGACCCATAGCGCATAGAACAAGTCG 5448 Query 245051 CTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCG 245110 | | | ||| || ||| |||||| | ||| |||| || || || ||||| Sbjct 5447 CGCGCTCGATGCAACTCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCT 5388 Query 245111 ACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCC 245170 ||||||| || |||| || ||||||| | ||| || ||| || ||||||||| Sbjct 5387 GCGTGCCACGGTTCCAAATACACAGCGAACGAGCCTTTGCGTTTGCCTCCGCCCTGGTCC 5328 Query 245171 ACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCG 245230 || | | | ||||||| | |||||| | || | |||||||| || |||| Sbjct 5327 ACGTAGCGCGCCGTGTCGTTGAATACGCGCAGCATGGGGATGATGCCGTTGGACGAGCCG 5268 Query 245231 TTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCG 245290 |||||||| |||||| | | | | || |||| ||| ||||| | || Sbjct 5267 TTGGTGCCGCGAATGTAGCTGTTGGTAGCTCGGATGTTGTGCATGCTGATGCCGATGCCT 5208 Query 245291 CCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTG 245350 || || |||||||||| ||||| ||||| ||||| || ||||| ||| | Sbjct 5207 CCTGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATTCCCTCGATGGAG 5148 Query 245351 TCCGACTT-CATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTT 245409 | || ||| |||| ||||| ||||| || |||| ||| || || ||| | ||| Sbjct 5147 T-CGTCTTGCATGGCTAGCAGGAAGCACGACGACAACTGCGGACGCGGCGTGCCGGCGTT 5089 Query 245410 GAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGAACCCGTACGTCTGGA 245468 ||||| ||||| |||| || || ||| | | || ||| | || | |||||||||| | Sbjct 5088 AAACAGCGTGGGCGTGGCATGCGTGAAG-AACTTCTGCGACATGAGCTCGTACGTCTGCA 5030 Query 245469 GCAGAGCGTCGATGT 245483 || || | ||||| Sbjct 5029 GCGCCGCCTGGATGT 5015 >seq7045 Length=3816 Score = 233 bits (258), Expect = 4e-56 Identities = 500/735 (68%), Gaps = 23/735 (3%) Strand=Plus/Minus Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||||| || | || || || ||||| ||| ||| || || |||||||| || ||| Sbjct 3199 TTCATCAAACACGTGCTCGCATTTTTCGCTGCCAGTGATGGGATCGTCAATGAAAATCTG 3140 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAG 42527 |||| | |||| || || |||||| ||| || || ||||||||||| |||||| Sbjct 3139 GCCATGAACTTCAGCAACGAAGTGCAGGTGCCTGAAGCTCGATGCTTCTACGGTTTCCAG 3080 Query 42528 ATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATC 42584 || ||||| |||||| | ||||| || || ||| | |||||||| ||||||| ||| Sbjct 3079 ATCGCCATTGAGAACATCCACTCCGAAGTCTACTC---ACTGCTCATTGACACGTATATC 3023 Query 42585 CTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAG 42644 |||| | || ||| ||| ||| | ||||| ||||| || |||||| | | Sbjct 3022 AAGGATACTGTGGAGAAAAACTATCTGCTGCGTGCCATCGAGACAATTCCCTGCGTTCAA 2963 Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGC---GA 42700 ||||| ||| ||||||| | || ||| ||| |||| | ||| | | || Sbjct 2962 AAGAAAGCGAACTGGGCATTGAAATGGTGCGA----CCCGCGTGTGTCGTCCTACCCGGA 2907 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 | | || | || ||| | | || || || |||||||| ||||| | ||| | ||| Sbjct 2906 GCGATTGCTGGCGTTTGCTTCAGTGGAAGGTATCTTCTTTTCGGGGTCGTTCTGCAGCAT 2847 Query 42761 CTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 |||||||||||| || ||| || ||||| || |||| ||||||||| || | |||| Sbjct 2846 TTTCTGGCTCAAGAAGCGAGGCCTC-ATGCCTGGTCTCAGCTTCTCGAATGAGATGATCA 2788 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 | | ||||| || |||| | ||||| ||||||||| ||| ||||| ||| Sbjct 2787 GTCGTGACGAAGGTATGCACACAGACTTCGCCTGCCTCATGTACTCGAAATTGGTCA--- 2731 Query 42880 ACAAGC-CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAG 42938 |||| | | ||| | || || | | |||||| || || |||| ||| || | Sbjct 2730 ACAAACTACCAGAAAG-TCGTGTACACGAGATCATCCGCGATGCGGTGGTGATTGAACAC 2672 Query 42939 GAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTG 42997 |||||| || | || || || ||| || |||||||||| | |||| || ||||| Sbjct 2671 GAGTTCGTCTGCGAATCTCTTCCTGTGGAGTTGATCGGCATGAA-CTCGACTCTAATGTG 2613 Query 42998 CAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTA 43057 | ||||||| ||| ||||| |||| | |||| | | ||||| | | | || Sbjct 2612 CCAGTACATTGAGTTTGTCGCTGACCGCTTGCTGTACTCGCTGGGTGTGTCCAAGATATA 2553 Query 43058 CAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTT 43117 |||| | ||| ||||||| ||||| | ||||| ||| |||| ||||||||||| Sbjct 2552 CAACGTCAAGAACCCGTTCGACTGGATGGATATGATCTCATTGCAGGGAAAGACCAACTT 2493 Query 43118 TTTCGAGAAGCGCGT 43132 || || ||||| || Sbjct 2492 CTTTGAAAAGCGTGT 2478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944055437874640