Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq238 140 8e-28 seq1885 123 6e-23 SEQ15627 122 2e-22 seq321 102 2e-16 seq43 87.8 4e-12 >seq238 Length=29854 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| ||||| || | |||| ||| || ||||| || |||| Sbjct 21164 CATG-CCACCACGGAGACGAAGCACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGT 21222 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || ||||| ||||| || | || || || |||||||| || ||||| || | Sbjct 21223 CACTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAG 21282 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| |||||||| ||||| || ||| || ||||| || || ||||| | | Sbjct 21283 GGGGGATGCCTTCTTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAATCTGAAGGCT 21342 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| || | ||||||||||| ||||||| ||||||||||| |||||||| Sbjct 21343 CTACATCCAATGTGATCGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 21394 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || || || | || || || ||||| || || | Sbjct 21392 CATG-CCACCACGCAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAAT 21450 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||||| || || || || | || || || |||||||| |||||||| ||| | Sbjct 21451 CGCTCAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAG 21510 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || |||||||| || ||||| |||||| || ||||| || || ||||| || | Sbjct 21511 GGGGAATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAATCCGACGGCT 21570 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||||||||| ||||| || ||||| || || |||||||| Sbjct 21571 CCACGTCGAGCGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 21622 Score = 105 bits (116), Expect = 2e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| || | ||| || || || | || || || ||||| || |||||| Sbjct 20711 TCCGCCGCGAAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 20770 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||||| || || || || | || || || || ||||| |||||||| || | || Sbjct 20771 CAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGG 20830 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| || ||||| |||||| || || || || || || || || || || Sbjct 20831 GATGCCTTCCTTGTCCTGAATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGCTCCAC 20890 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| ||||||| ||||| || || |||||||| Sbjct 20891 GTCCAGAGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 20938 Score = 100 bits (110), Expect = 7e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| || ||||| ||||| || | ||| || || |||||| Sbjct 20976 TCCTTCTGAATGTTGTAGTCACTCAGAGTGCGACCGTCCTCAAGTTGCTTGCCAGCGAAG 21035 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 || || ||||| || | ||||| ||||| || || || || ||| |||| ||||| Sbjct 21036 ATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGAATCTTTTGCTTG-ACGTT 21094 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || || || ||| || ||||| || || || || || || ||||||||||| Sbjct 21095 GTCGATCGAGTCCGACGGTTCCACGTCGAGGGTAATAGTTTTACCCGTAAGAGTCTTGAC 21154 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 21155 GAAAATCTGCAT 21166 >seq1885 Length=10629 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 6243 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6184 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | ||||| ||||| || |||||||||||| || ||||| || Sbjct 6183 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 6124 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || || || || |||||||| ||||| || ||||| ||||| || || Sbjct 6123 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 6064 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 6063 ATCTGCATGAT 6053 >SEQ15627 Length=1670 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| ||| || || || || || |||||| Sbjct 1373 CCACCACGTAGACGAAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1432 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | || || || || ||||| |||||| |||| | | | Sbjct 1433 AGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGA 1492 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || ||||| |||||| || ||||| || || || || || || || Sbjct 1493 ATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 1552 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| ||||| || ||||| || || || ||||| Sbjct 1553 TCGAGCGTGATTGTCTTGCCGGTGAGGGTCTTCACAAAAATTTGCAT 1599 >seq321 Length=26016 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||| | ||||| || ||||||| || || || |||||| Sbjct 10074 TCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCTAGCTGCTTGCCGGCGAAG 10015 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | || || ||||| || ||||| || ||| ||||| || Sbjct 10014 ATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATTG 9955 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || ||| || || || || || || || || || || || |||||||| ||| Sbjct 9954 TCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGTAAGAGTCTTCACG 9895 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 9894 AAAATCTGCAT 9884 >seq43 Length=56266 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 326178 CGTTCTT--CGTGATGCTTGCCACGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAG 326235 ||||||| || | ||| ||||| | ||||||||| || || | ||||| || ||||| Sbjct 26126 CGTTCTTACCGAGTTGC--GCCACTGTTGCATCGCGCACATTGAGAAGTTTACCGCGAAG 26183 Query 326236 AGGGAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGC 326295 |||||| || || || ||||| || || || | || ||||| | |||||||| Sbjct 26184 AGGGAAAACACCGTACTGATCGCGTCCAACAACTGCAAGGCCTGCCACTGCAAGTGCTTT 26243 Query 326296 TGCGGAATCCCCCTCCGTCAGAATGAGAGTGCACA 326330 |||||||| || ||||||| ||| ||||||||| Sbjct 26244 GGCGGAATCGCCTTCCGTCAAAAT--GAGTGCACA 26276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179291066813442