Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq96 158 3e-33 seq1 127 5e-24 seq7045 114 3e-20 seq43 91.5 3e-13 >seq96 Length=42084 Score = 158 bits (174), Expect = 3e-33 Identities = 676/1057 (64%), Gaps = 55/1057 (5%) Strand=Plus/Plus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||| |||||||| ||||||| ||||| |||||||||| ||| |||||| Sbjct 20338 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCAAGG 20397 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 ||| ||| |||||||||||||| ||||| |||||||| || | |||||| || ||| Sbjct 20398 TGAGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGCAGGGTGC 20457 Query 333435 TTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTT 333494 ||||| || ||| | || | |||| | ||||| |||| ||| || || || Sbjct 20458 TTCCACACCTGACCGCTAGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 20517 Query 333495 TTTCCCGCACCATTTTCGCCTACCACACCAATCCTG-------GAGTTCAGCGATACCTG 333547 || || ||||| || || | ||| | || | | ||| || || || | Sbjct 20518 TTACCGGCACCGTTGGGTCCCAGCACGGCGATACGGCTCGACAGAGCGCA-CGTCAC--G 20574 Query 333548 GGCATTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCG 333607 | || ||||| | | || | |||||| |||| | | | ||| || Sbjct 20575 GAGAT----GTTGTTGATCGACGGCTTGGGGGCACCCGGGTACTGGTA-CGAACAGTTCG 20629 Query 333608 T-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGA 333666 | || ||||||| |||| |||| | | ||||| || ||||| |||| Sbjct 20630 TCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGGGA 20689 Query 333667 ACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCT 333723 || | || | | ||| || |||| || ||||||| | | || || || Sbjct 20690 ACGTGAACTTCACGTTCTCCGACTCG---AGTTCGTAGTAGGCCTTGGCCTCAGGCTTCT 20746 Query 333724 TCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAAT 333783 || |||||||| ||| || || |||||||| |||||||||| || | ||||| | Sbjct 20747 GCTCCACGAACTTGGAGAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTCGTAGT 20803 Query 333784 GGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACG 333843 | || || ||||| || | ||||||||| || |||||||| ||||| || | | | | Sbjct 20804 GAATGATGTTCGTGCAGACCGTGTCGAGGAAGCCAGAGTCGTGGGACACCATGATGGAGG 20863 Query 333844 AAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAAG 333901 |||| | ||| || ||||||| ||| || ||||| ||||| ||| | Sbjct 20864 TCACGTTGGTCAGGCTGGTCAGGTAGTTC--TCGAGCCAGGCAACGTTCTTGACATCCAA 20921 Query 333902 ATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 333961 ||||| |||||||| |||||||| || | | || ||| | ||||| ||||| || || Sbjct 20922 GTGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGCAGCATAGCACGGGCCAG 20981 Query 333962 AGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAA----TTGGG---GCAGATTGGC 334014 | | |||||| ||||| || || ||||| ||| || |||| ||| | ||| Sbjct 20982 CTCCAATTTCATCTTCCAACCACCCGAAAGCGTGCCAACGGCCTGGGCCTGCATCTCGGC 21041 Query 334015 GCTCAATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGT 334074 | | ||||| || | ||||| ||| || | || | | Sbjct 21042 GGT-------GAAGCCGACACCAGCAAGAGTGTCCTCGACCTCCTTGCGGGGC------G 21088 Query 334075 TTTCCTTTACTTGTTCATCATTGGCA---ATGAAGTCAATGATAGCCATGTTAGAATCGG 334131 | ||| | | || |||| |||| |||||||| | | || | | || || | Sbjct 21089 TCGACTTCA---GGTCGTCATCGGCAAGGATGAAGTCCACCACAGAGAGCTCAGCCTCCG 21145 Query 334132 ACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTT 334191 | | | || | ||| || ||| | |||| |||| | || |||||| || | Sbjct 21146 AAGCCTGCAGGTTGTGCTCAACGAACACAGTCTTCAGCTCGTCACGGCTGGGGAAGCCCT 21205 Query 334192 CAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCAC 334251 ||||||| |||||| || |||||||| || || || ||||| ||||| || || | Sbjct 21206 CAAGCTGGCCGTTCGAGATGGCGCGCATGAGGGTCGACTTACCACAACCGTTGGGACCGC 21265 Query 334252 ACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTC 334311 |||||||||| |||| ||||||||| || | || | ||||| || ||||| | | Sbjct 21266 ACAGACCGTAACGGTGTCCACGCTTGAGGCGAAGACGGGCGTTGTTGAGCAGAATCATAC 21325 Query 334312 CACCATATGCCAGAGAAAATTCACAATCACACAGATC 334348 |||| || || || || || || || | ||||| || Sbjct 21326 CACCGTAAGCAAGCGAGAACTCGCAGTTGCACAGGTC 21362 >seq1 Length=128069 Score = 127 bits (140), Expect = 5e-24 Identities = 293/437 (67%), Gaps = 12/437 (3%) Strand=Plus/Plus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 |||||||| |||||| | | || ||||| || | || || || |||||| || Sbjct 111342 GAGCGTCTGCTCGCCTTCGCGGCGGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCC 111401 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| ||| | ||||| || ||| || | || |||||| |||| Sbjct 111402 ATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCAGTTTCTCGAACGAGCTCATT 111461 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAAC 243474 || || ||||||||| | ||| | || | || ||||| || |||||| |||| Sbjct 111462 AGCCGTGACGAGGGCATGCACACGGACTTTGCCTGCCTCATGTACTCGAAGCTCGTGAAC 111521 Query 243475 AAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGA 243533 ||||| || || || || | | ||| | || || || | | ||| | || Sbjct 111522 AAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCGTGATGCTGTGGTGATCGAGCATGA 111580 Query 243534 ATTCATTTGCGACGCTATTCCATGCCGG-----CTTATTGGCATGAACTCTGAACTCATG 243588 || || | ||| |||| |||||| || || || |||||||| | |||||| Sbjct 111581 GTT----TGTG-CGCGATTCGCTGCCGGTGGAGCTCATCGGTATGAACTCGGGCCTCATG 111635 Query 243589 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTG 243648 | |||||||| || ||||| || |||||| || || | |||| || | || | Sbjct 111636 TGCCAGTACATTGAGTTCGTGGCTGACCGCCTTCTCTACTCGCTGGGAGTTTCCAAGATC 111695 Query 243649 TACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAAC 243708 |||||| | |||||||| || | || ||||| | || ||||| || || || || ||| Sbjct 111696 TACAACGCGAAGAACCCTTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAAC 111755 Query 243709 TTCTTCGAAAAGCGTGT 243725 |||||||| |||||||| Sbjct 111756 TTCTTCGAGAAGCGTGT 111772 >seq7045 Length=3816 Score = 114 bits (126), Expect = 3e-20 Identities = 555/866 (64%), Gaps = 30/866 (3%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| || || | | ||| ||||| | ||||| ||||| || | || | || ||| Sbjct 3328 TTCCCGATTCAAGAACACGATGTGTGGCAGATGTACAAGAAAGCGGAAGCTTCGTTCTGG 3269 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || |||||||| | ||| ||| ||| || || ||| |||||||||| || Sbjct 3268 ACAGCCGAGGAACTCGATCTCGT-GCACGACCTCAAAGATTGG---GAGAAACTCACGGA 3213 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 | || || || |||||||||||| | || | |||||||| | | ||||| || || Sbjct 3212 TAATGAGCGCCACTTCATCAAACACGTGCTCGCATTTTTCGCTGCCAGTGATGGGATCGT 3153 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 | ||||||||| | ||||| || ||||| ||| || || || || || Sbjct 3152 CAATGAAAATCTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCTGAAGCTCGATGCTT 3093 Query 243114 TTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTA 243169 || | || ||| | |||| | ||| ||||| || ||| || | || || | Sbjct 3092 CTACGGTTTCCAGATCGCCATTGA--GAAC--ATCCACTCCGAAGTCTACTCACTGCTCA 3037 Query 243170 TCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAA 243227 | ||| || ||| ||| ||| ||| |||| | || | |||||||| | Sbjct 3036 TTGACACG--TATATCAAGGATACTGTGGAGAAAAACTATCTGCTGCGTGCCATCGAGAC 2979 Query 243228 CATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAATC 243287 ||||| ||||| || || || || ||||| ||| ||| || || || || Sbjct 2978 AATTCCCTGCGTTCAAAAGAAAGCGAACTGGGCATTGAAATGGTGCGACCCGCGTGTGTC 2919 Query 243288 ATTTG---CTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAG 243344 | | ||||| | | || | | | || |||||||| | ||||| ||| Sbjct 2918 GTCCTACCCGGAGCGATTGCTGGCGTTTGCTTCAGTGGAAGGTATCTTCTTTTCGGGGTC 2859 Query 243345 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 |||||| ||| || ||||| ||| ||| | |||||||| ||| | | || || Sbjct 2858 GTTCTGCAGCATTTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGTCTCAGCTTCTCGAA 2799 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAA 243464 ||| | |||||||| ||||| || | ||| | | |||| || ||||| || || Sbjct 2798 TGAGATGATCAGTCGTGACGAAGGTATGCACACAGACTTCGCCTGCCTCATGTACTCGAA 2739 Query 243465 GCTCCAGAACAAGCTACCATTCGAAA--CGGTCAAACAA-ATCATCACAGAAGCAGTTGA 243521 | ||||| |||||| |||| || | || | |||||| || || || | Sbjct 2738 ATTGGTCAACAAACTACCA---GAAAGTCGTGTACACGAGATCATCCGCGATGCGGTGGT 2682 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT-ATTGGCATGAACTCTG 243580 | ||| | || ||| | ||||| || |||| || | || || ||||||||||| Sbjct 2681 GATTGAACACGAGTTCGTCTGCGAATCTCTTCC-TGTGGAGTTGATCGGCATGAACTCGA 2623 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 || ||| | |||||||| || || || || |||||| | | | |||| ||| || Sbjct 2622 CTCTAATGTGCCAGTACATTGAGTTTGTCGCTGACCGCTTGCTGTACTCGCTGGGTG-TG 2564 Query 243641 AGAAAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||| | |||||| ||||||||| || | || ||||| | || || | || || Sbjct 2563 TCCAAGATATACAACGTCAAGAACCCGTTCGACTGGATGGATATGATCTCATTGCAGGGA 2504 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGT 243725 || || |||||||| ||||||||||| Sbjct 2503 AAGACCAACTTCTTTGAAAAGCGTGT 2478 >seq43 Length=56266 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 298299 CGTTCTT--CGTGATGCTTGCCACGGATGCATCGCGGACATTCAATAGTTTTCCACGAAG 298356 ||||||| || | ||| ||||| | ||||||||| ||||| | ||||| || ||||| Sbjct 26126 CGTTCTTACCGAGTTGC--GCCACTGTTGCATCGCGCACATTGAGAAGTTTACCGCGAAG 26183 Query 298357 AGGGAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGC 298416 |||||| || || || ||||| || || || | || ||||| | |||||||| Sbjct 26184 AGGGAAAACACCGTACTGATCGCGTCCAACAACTGCAAGGCCTGCCACTGCAAGTGCTTT 26243 Query 298417 TGCGGAATCCCCCTCCGTCAGAATGAGAGTGCACA 298451 |||||||| || ||||||| ||| ||||||||| Sbjct 26244 GGCGGAATCGCCTTCCGTCAAAAT--GAGTGCACA 26276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102540313304650