Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2671 154 2e-32 seq1 145 9e-30 seq43 109 7e-19 seq7045 100 3e-16 >seq2671 Length=8519 Score = 154 bits (170), Expect = 2e-32 Identities = 387/582 (66%), Gaps = 7/582 (1%) Strand=Plus/Minus Query 114680 GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCT 114739 || || ||||||| ||||||| | |||||| | ||||||||| || ||| | ||| Sbjct 5609 GCACGTCCCTCCTTTTCGTACTGTTCGTAGAGCGTTTCAAACTCGTCTCCCCAGCACTCG 5550 Query 114740 GAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGC 114799 | || || || || | || |||||||| | | ||| | ||| |||| || | | Sbjct 5549 TAAAGACCCGGAGCTTCATTGGGGCAGAACAAACTCCACTTGCCATTGGCCTCCACCCTC 5490 Query 114800 TTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGA-GCTTCTTC 114858 |||||||| || || |||| ||| || || |||| | || || ||| || || | Sbjct 5489 TTCATGAACAGATCAGGGACCCATAGCGCATAGAACAAGTCGCGCGCTCGATGCAACT-C 5431 Query 114859 ATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAG 114918 | || || || |||| |||| || || | | || |||||||||||||||| Sbjct 5430 GTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCTGCGTGCCACGGTTCCAA 5371 Query 114919 GTACACCGCGATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCTGTGGC 114975 ||||| |||| || || || || | || |||||| || || | ||| ||| | Sbjct 5370 ATACACAGCGAACGAGCCTTTGCGTTTGCCTCCGCCCTGGTCCACGTAGCGCGCCGTGTC 5311 Query 114976 ATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACG 115035 || |||||||| ||||| || ||||| || | || ||| || || || ||||| Sbjct 5310 GTTGAATACGCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTGGTGCCGCGAATGTA 5251 Query 115036 AGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGAT 115095 || | |||| || | || ||| || || || || ||||||||||| ||||| Sbjct 5250 GCTGTTGGTAGCTCGGATGTTGTGCATGCTGATGCCGATGCCTCCTGCCCACTTGGAGAT 5191 Query 115096 TTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGAT 115155 |||||||| | |||| || ||||||| || ||||| ||||| | | | || | Sbjct 5190 GCACGCGCACTGCTTGAGCGTGTCGTAGATTCCCTCGATGGAGTCGTCTTGCATGGCTAG 5131 Query 115156 AAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGC 115215 |||||||| ||||| || || | || || || ||||| || || || || || || Sbjct 5130 CAGGAAGCACGACGACAACTGCGGACGCGGCGTGCCGGCGTTAAACAGCGTGGGCGTGGC 5071 Query 115216 GTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCA 115256 || |||| | || | || ||||| ||||| |||| || Sbjct 5070 ATGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTGCA 5030 >seq1 Length=128069 Score = 145 bits (160), Expect = 9e-30 Identities = 310/456 (68%), Gaps = 9/456 (2%) Strand=Plus/Minus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 111793 CCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAG 111734 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 125866 || | ||||| | || || |||||||| | ||| | || | | || || | | Sbjct 111733 ATCATGTCCATCCAGTCGAAAGGGTTCTTCGCGTTGTAGATCTTGGAAACTCCCAGCGAG 111674 Query 125867 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 125926 | ||| || || || | ||| |||||||||||| |||| | |||||||||||| Sbjct 111673 TAGAGAAGGCGGTCAGCCACGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATACCG 111614 Query 125927 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGC 125986 ||||| | || |||| || | ||| | | ||| || |||| || || ||| Sbjct 111613 ATGAGCTCCACCGGCAGCGAATCGCGCACAAACTCATGCTCGATCACCACAGCATCACGC 111554 Query 125987 ACGATGGCGTGAATGGTGTCCACCC-CAGGTCTATT---GCGCAAAGTCTTGAAGAGTTC 126042 ||||| |||| | | | | || ||| | | || | || | | | ||| Sbjct 111553 ACGATCTCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACGAGCTTCGAGTACATGAGG-- 111497 Query 126043 CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 126102 || |||||| || ||| | |||||||||||| ||||| || |||||||| | || Sbjct 111496 CA-GGCAAAGTCCGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAACTGAG 111438 Query 126103 TCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAA 126162 || ||||||||||| |||||||| | |||||| || | || || || ||||||||||| Sbjct 111437 ACCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAA 111378 Query 126163 GATTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 ||| || ||||| |||||| || | |||||||| Sbjct 111377 GATGCCTTCCACCGCCGCGAAGGCGAGCAGACGCTC 111342 >seq43 Length=56266 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 172762 GAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACC 172821 |||||||||||||| |||||||| ||||| | || || || |||||||| ||||| Sbjct 26136 GAGTTGCGCCACTGTTGCATCGCGCACATTGAGAAGTTTACCGCGAAGAGGGAAAACACC 26195 Query 172822 GTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACC 172881 ||| ||||| || ||||| || | ||| || || ||||| || | || |||||||| || Sbjct 26196 GTACTGATCGCGTCCAACAACTGCAAGGCCTGCCACTGCAAGTGCTTTGGCGGAATCGCC 26255 Query 172882 CTCCGTCACGATGAGCGTACACT 172904 ||||||| ||||| | ||||| Sbjct 26256 TTCCGTCAAAATGAGTGCACACT 26278 >seq7045 Length=3816 Score = 100 bits (110), Expect = 3e-16 Identities = 295/446 (66%), Gaps = 13/446 (3%) Strand=Plus/Plus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| ||||| || ||||| || |||||||| ||||| || | ||| | Sbjct 2457 CCAGCCTTGGAGTACTCCCCCACACGCTTTTCAAAGAAGTTGGTCTTTCCCTGCAATGAG 2516 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 125866 || | ||||| | || || |||||||| ||| | || | | ||| || | | Sbjct 2517 ATCATATCCATCCAGTCGAACGGGTTCTTGACGTTGTATATCTTGGACACACCCAGCGAG 2576 Query 125867 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 125926 | || | || || | ||| |||||||||||| |||| |||||||| ||| Sbjct 2577 TACAGCAAGCGGTCAGCGACAAACTCAATGTACTGGCACATTAGAGTCGAGTTCATGCCG 2636 Query 125927 ATGAGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCG 125985 || | | ||| || || | || ||| |||| | | ||||| |||| || || || Sbjct 2637 ATCAACTCCACA-GGAAGAGATTCGCAGACGAACTCGTGTTCAATCACCACCGCATCGCG 2695 Query 125986 CACGATGGCGTGAATGGTGTCCACCC-CAGGTC---TATTGCGCAAAGTCTTGAAGA-GT 126040 | ||| |||| | | || | ||| | ||| ||| || | | | | Sbjct 2696 GATGATCTCGTGTACA----CGACTTTCTGGTAGTTTGTTGACCAATTTCGAGTACATGA 2751 Query 126041 TCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 126100 || ||| || ||| ||| | ||| |||||||| ||| | ||||||||||||| Sbjct 2752 GGCA-GGCGAAGTCTGTGTGCATACCTTCGTCACGACTGATCATCTCATTCGAGAAGCTG 2810 Query 126101 AGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAG 126160 || || |||||||| || |||||||| | ||||||||| || || || ||||| ||| Sbjct 2811 AGACCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAAATGCTGCAGAACGACCCCGAAAAG 2870 Query 126161 AAGATTCCCTCCACACACGCGAACGC 126186 ||||| || ||||| | || ||||| Sbjct 2871 AAGATACCTTCCACTGAAGCAAACGC 2896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597174102710120