Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq321 127 2e-24 seq238 127 2e-24 seq1885 125 8e-24 >seq321 Length=26016 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| || | || |||||| ||||| ||||| ||| |||||| || | Sbjct 9871 ACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCC 9812 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || ||||||||||| ||||| || |||||||| || ||||| | || | || ||||| Sbjct 9811 ATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTT 9752 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| || || || || | ||| | | | | ||| || |||||||| | ||||| Sbjct 9751 GTCCTGAATCTTCTGCTTCA-CGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGA 9693 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || | |||||| |||||||| ||||| Sbjct 9692 TGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9656 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| ||| |||||| || | || ||||||||||| ||||| || Sbjct 9619 CTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCAAA 9560 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 |||||||| || ||||| | || | || ||||||||| || || || || | ||| Sbjct 9559 GATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGT 9501 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | | ||| || |||||||| | ||||||||| ||||| || | |||||| | Sbjct 9500 TGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTTGCCGGTCAACGTCTTCA 9441 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 9440 CAAAGATCTGCAT 9428 Score = 114 bits (126), Expect = 1e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| | ||||| || |||||| || || ||||| || |||||| || | Sbjct 9415 ACGAAGCACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCC 9356 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || ||||||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 9355 ATCCTCTAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTT 9296 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| |||||||| || | ||| | | | | ||| || ||||| |||| |||| Sbjct 9295 GTCCTGAATTTTTTGCTTCA-CGTTGTCGATGGAGTCCGACGGCTCCACGTCGAGTGTGA 9237 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| ||||| || | ||||| || ||||| ||||| || Sbjct 9236 TGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCATCTT 9197 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| || || || | || ||||||||||| || ||||| Sbjct 10075 CTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCTAGCTGCTTGCCGGCGAA 10016 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| || || || || | | Sbjct 10015 GATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATT 9956 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || |||| || || || || | || || ||||| ||||| || ||||| || Sbjct 9955 GTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGTAAGAGTCTTCAC 9896 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 9895 GAAAATCTGCAT 9884 >seq238 Length=29854 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||| |||| || |||||| ||||| ||||| ||| |||||| || | Sbjct 20951 ACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGACC 21010 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || || ||||| |||||||| ||||||||||||||||| | || | || ||||| Sbjct 21011 GTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCCTT 21070 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| || ||||| |||| ||| | | | || ||| || |||||| |||| || | Sbjct 21071 GTCTTGAATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGTTCCACGTCGAGGGTAA 21129 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| ||||| || ||||| || || || ||||| Sbjct 21130 TAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCAT 21166 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| | ||||| ||| ||||| || || ||||| ||| ||| || || | Sbjct 21179 ACGAAGCACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACC 21238 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| ||||||||||||||||| | || | || || || Sbjct 21239 GTCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTT 21298 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| || || || |||| ||| | | | || || | || ||||| | |||| Sbjct 21299 GTCCTGAATCTTCTGCTTGA-CGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGA 21357 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || | |||||| || ||||| ||||| Sbjct 21358 TCGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 21394 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 20723 ACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCC 20782 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||||||||| || ||||| ||||||||||| | || | || ||||| Sbjct 20783 ATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTT 20842 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||||| || || | | | | | ||| || ||||| || | ||||| Sbjct 20843 GTCCTGAATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGCTCCACGTCCAGAGTGAT 20902 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || | ||||| ||||| || ||||| Sbjct 20903 CGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 20938 >seq1885 Length=10629 Score = 125 bits (138), Expect = 8e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 6245 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6186 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | || ||||||||| |||||| || |||| ||| | Sbjct 6185 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CGTTG 6127 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | ||||| || ||||| || | ||||||||| |||||||| || ||||| ||| Sbjct 6126 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 6067 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 6066 AAGATCTGCAT 6056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543049571343760