Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq321 131 2e-25 SEQ15627 127 2e-24 seq238 125 7e-24 seq1885 98.7 1e-15 seq8293 86.0 6e-12 >seq321 Length=26016 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| || || | |||||| || || || |||||||| || Sbjct 9426 CCACCACGCAGACGAAGCACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTC 9367 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || ||||||||||| || | ||||| ||||||||||| || ||| Sbjct 9366 AGAGTACGTCCATCCTCTAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGA 9307 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 |||||||| || || || ||||||||||| || || | | | | |||| ||||| Sbjct 9306 ATTCCTTCCTTGTCCTGAATTTTTTGCTTCACGTTGTCGATGGAGTCCGACGGC-TCCAC 9248 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||||||||||||| || ||||| || ||||| || Sbjct 9247 GTCGAGTGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCATCTT 9197 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| || || | ||||| || || || ||||||||||| Sbjct 10110 CCTCCACGCAGGCGAAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTC 10051 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| |||||||||||||| | || || ||||||||||| |||||| Sbjct 10050 AATGTGCGACCATCTTCTAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 9991 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATC-ACCGGCGTCCAC 64395 || ||||| || || || || || ||||| ||| || | | || |||| || || Sbjct 9990 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATCGAGTCGGACGGC-TCGAC 9932 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || || || || | ||| || |||||||| ||||| Sbjct 9931 GTCCAGGGTAATAGTTTTACCCGTAAGAGTCTTCACGAAAATCTGCAT 9884 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || | ||||| || || ||||||||||| || | || || | || Sbjct 9640 AAGCACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATC 9581 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| ||| | ||||| || || ||||| ||||| || ||||| || || Sbjct 9580 CTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTC 9521 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGG 64409 || || || ||||| || || | || | | |||| ||||| || | || | || Sbjct 9520 CTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGC-TCCACATCCAACGTGATGG 9462 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||||| || || || || || ||||| Sbjct 9461 TCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9428 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || || ||||||||||| || | || || | || Sbjct 9867 AGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCC 9808 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||| || || ||||| ||||| || ||||| || || Sbjct 9807 TCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCC 9748 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||||| || || | || | | |||| ||||| || | || | ||| Sbjct 9747 TGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGC-TCCACATCCAACGTGATGGT 9689 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||||| || || || || || ||||| Sbjct 9688 CTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9656 >SEQ15627 Length=1670 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || |||| |||||| || || ||||||||||| || | |||||| |||| Sbjct 1387 AAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTC 1446 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | ||||| ||| | ||||| || |||||||||| || || Sbjct 1447 TTCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTC 1506 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGG 64409 || ||||| ||||| || || | | | | |||| ||||| || | || | | Sbjct 1507 CTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGC-TCCACGTCGAGCGTGATTG 1565 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||||| | || || || ||||||||||| || Sbjct 1566 TCTTGCCGGTGAGGGTCTTCACAAAAATTTGCATCTT 1602 >seq238 Length=29854 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | |||||| || || | ||||| || || || |||||||| || Sbjct 20712 CCGCCGCGAAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 20771 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || |||||||| || ||| | ||||| ||||||||||| ||||| Sbjct 20772 AGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 20831 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || ||||| || || || ||||| ||||| ||| || | || | | |||| ||||| Sbjct 20832 ATGCCTTCCTTGTCCTGAATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGC-TCCAC 20890 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||||||||||| || || || ||||| ||||| Sbjct 20891 GTCCAGAGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 20938 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || | ||| ||||| || || |||||||| || | |||||| |||| Sbjct 21182 AAGCACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTC 21241 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| || | ||||| ||||||||||| || || || |||||||| || Sbjct 21242 CTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTC 21301 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||||| || || | | ||| | || || || | || | || Sbjct 21302 CTGAATCTTCTGCTTGACGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGT 21361 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||||| || || ||||| || ||||| Sbjct 21362 CTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 21394 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| || || | ||||| || || || ||||||||||| Sbjct 21396 CCACCACGCAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTC 21455 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || ||||||||||| || | || || |||||||| || || ||| Sbjct 21456 AGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 21515 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 |||||||| || || || ||||| ||||| || || | | || | |||| ||||| Sbjct 21516 ATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAATCCGACGGC-TCCAC 21574 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||||| | || || || || || ||||| || Sbjct 21575 GTCGAGCGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTT 21625 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || ||||||||||| || | ||||| |||| ||||| |||||||| Sbjct 20970 GTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGACCGTCCTCAAGTTGCTTGCCA 21029 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| ||||||||||| || || || ||||| || ||||| || |||||||| Sbjct 21030 GCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGAATCTTTTGCTTG 21089 Query 64367 ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 || || | | | ||| || ||||| || | || | || || || || | || Sbjct 21090 ACGTTGTCGATCGAGT--CCGACGGTTCCACGTCGAGGGTAATAGTTTTACCCGTAAGAG 21147 Query 64425 TTTTTACGAAAATTTGCAT 64443 | || |||||||| ||||| Sbjct 21148 TCTTGACGAAAATCTGCAT 21166 >seq1885 Length=10629 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || ||||| |||| || |||||||||||||| | || Sbjct 6243 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6184 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| || || || ||||| || || || ||||| ||||| || || Sbjct 6183 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 6124 Query 64376 A--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | |||| | |||| ||||| || | || | ||||||||| |||| || || || | Sbjct 6123 ATGCTGTCGGA-CGGC-TCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 6066 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 6065 AGATCTGCAT 6056 >seq8293 Length=3242 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||||| || | ||||| || || || |||||||| || | Sbjct 2570 ACCACCACGCAGACGGAGCACTAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 2511 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| || ||||||||||| || | || || ||||||||||| || || Sbjct 2510 CAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGGGG 2451 Query 64336 AATTCCT 64342 ||||||| Sbjct 2450 AATTCCT 2444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499494662983160