Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_011055.1 Length=76312 Score E Sequences producing significant alignments: (Bits) Value seq1267 84.2 1e-11 >seq1267 Length=13579 Score = 84.2 bits (92), Expect = 1e-11 Identities = 320/496 (65%), Gaps = 15/496 (3%) Strand=Plus/Minus Query 65238 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 65297 ||||||||| || || | | ||| | | || |||||||| | || || ||| |||| Sbjct 5285 CATCGACGCAGAACATGCTATCGACGCCCACTATGCCAAGGCATTGGGCGTTGACATCGA 5226 Query 65298 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 65357 ||| || ||||| ||| | || || | || || ||||||| |||| ||| Sbjct 5225 TGCTCTCTACGTCTCGCAGCCAGACTCGGGTGAAGAAGCGCTAGAGATCGCTGACACCCT 5166 Query 65358 CGTCAAGTCTGGCGAGCTGTCCATC--GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCG 65415 | || ||||| ||| || ||| || || | ||| |||||| || ||||| ||| Sbjct 5165 CATCCGATCTGG--AGCAGTGGATCTCGTGGTGCTGGACAGTGTGGCTGCGCTGGTACCG 5108 Query 65416 CGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATG 65475 || || |||||||| ||||| || || ||| || | | || || || || || ||| Sbjct 5107 CGTGCGGAGCTCGAGGGCGAGATGGGAGACCAGCAGATTGCGCTCCAGGCACGACTTATG 5048 Query 65476 TCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACGCTC 65532 ||||| ||||||| | || || | |||||| |||| ||| | | || Sbjct 5047 AGTCAGGCATTGCGCAAATTGACCGGATCGCTCTCCAAGTCCAATTGCACCATTA---TC 4991 Query 65533 TGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACC 65592 | |||||||| | || ||||| | || | | | || || || ||| ||| Sbjct 4990 TTCCTCAACCAGATCCGTCAGAAGGTAGGGATCAT---CTTTGGGTCGCCCGAAGTCACG 4934 Query 65593 ACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCC 65652 | || || | ||| ||| | | ||||| || || || | ||| | || |||| | | Sbjct 4933 TCCGGTGGTACGGCGTTGCGCTATTACGCGTCGGTGCGATTAGATATTCGCCGCAA-GAC 4875 Query 65653 ACCGAG-AAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAA 65711 ||| || ||||| || | | ||||| ||| || ||| ||||| | ||||| Sbjct 4874 GGCGATCAAAGAAGGTGACCAAGTCGTCGGGAACGAAACGGTGGTTAAGGTGGCTAAGAA 4815 Query 65712 CAAGCTGGCCCCGCCG 65727 ||||||||| ||||| Sbjct 4814 CAAGCTGGCTTCGCCG 4799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244002092460767