Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq1267 134 7e-27 >seq1267 Length=13579 Score = 134 bits (148), Expect = 7e-27 Identities = 392/595 (66%), Gaps = 28/595 (5%) Strand=Plus/Minus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || ||||||||||||||||| ||| ||| || ||| |||||||| || | | || Sbjct 5386 CGCGTGGTGGAGATCTACGGTCCCGAGAGTTCGGGCAAGACAACGTTG-GCTTTGA-GCT 5329 Query 66033 G--TGGCCAATGCCCAGAAGGCCG---GTGGCAACGCCGCCTACATCGACGCCGAACATT 66087 | | || | || ||||| ||| |||| | || | ||||||||| |||||| Sbjct 5328 GCATTGCTGAGGCTCAGAAAACCGAGGGTGGAGTCTGTGCATTCATCGACGCAGAACATG 5269 Query 66088 CTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGC 66147 || ||||| | | || ||| ||| | || || || |||| |||| || || Sbjct 5268 CTATCGACGCCCACTATGCCAAGGCATTGGGCGTTGACATCGATGCTCTCTACGTCTCGC 5209 Query 66148 AGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGG 66207 |||||||| | || || | || || ||||||| |||| ||| || ||||| | | Sbjct 5208 AGCCAGACTCGGGTGAAGAAGCGCTAGAGATCGCTGACACCCTCATCCGATCTGGAGCAG 5149 Query 66208 TTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGG 66267 | || | || ||||| |||||| || ||||| ||||| ||||||||||| || | Sbjct 5148 TGGATCTCGTGGTGCTGGACAGTGTGGCTGCGCTGGTACCGCGTGCGGAGCTCGAGGGCG 5089 Query 66268 ACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGC 66327 | || || ||| ||| | | || || || || || ||| |||||| ||||||| Sbjct 5088 AGATGGGAGACCAGCAGATTGCGCTCCAGGCACGACTTATGAGTCAGGCATTGCGCAAAT 5029 Query 66328 TGACCGGCACGATTGCCAGCACCAA---CACGCTCACCCTGTGGGTGAATCAGCTGCGCG 66384 ||||||| || | ||| |||| ||| || | | | || ||| | || Sbjct 5028 TGACCGGATCGCTCTCCAAGTCCAATTGCAC---CATTATCTTCCTCAACCAGATCCGTC 4972 Query 66385 AGAAGATCGG---CAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTC 66441 ||||| | || || | | || | ||||||| ||| ||||||||| ||| Sbjct 4971 AGAAGGTAGGGATCATCTTTGGGT--CGCCCGAA----GTCACGTCCGGTGGTACGGCGT 4918 Query 66442 TGCGCTTCTACGCCTCGGTGCGTATGGATGT---CCGCAGGATCGCCACCGAGAAGGAAG 66498 |||||| ||||| |||||||| | ||| | ||||| || || | | || |||| Sbjct 4917 TGCGCTATTACGCGTCGGTGCGATTAGATATTCGCCGCAAGACGGCGATC---AAAGAAG 4861 Query 66499 GCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 66553 | || | | ||||| ||| ||| || ||||| | |||||||||||||| Sbjct 4860 GTGACCAAGTCGTCGGGAACGAAACGGTGGTTAAGGTGGCTAAGAACAAGCTGGC 4806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242399362158788