Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2671 306 4e-78 >seq2671 Length=8519 Score = 306 bits (338), Expect = 4e-78 Identities = 997/1525 (65%), Gaps = 43/1525 (3%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGA-AGTCGTACCTCCTCAAGATGGATGGCAG 93776 ||||| ||||| | |||||| || ||||||| || | |||||| || || | |||| Sbjct 4897 TACGACTACTTCGGCTTCAAGACGCTGGAGAGAGGC-TACCTCTTCCGCGTGAACGGCAA 4955 Query 93777 GGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGA 93836 || ||||| ||||| ||| || | |||||||| || | || || ||| ||| Sbjct 4956 AGTGGTAGAGCGGCCGCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGACCGA 5015 Query 93837 CATGCCGAATGTTTTGCGGGCTTTCAGAGA-CATGCGGGACAAGAGGTATAC-CATGGCC 93894 ||| | | | ||| | | | | ||| |||| | | ||| | || |||| || Sbjct 5016 CATCCAGGCGGCGCTGCAGACGTAC-GAGCTCATGTCGCAGAAGTTCTTCACGCATG-CC 5073 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 || || || ||||| ||||| || || ||| || ||| |||| ||||| |||||| | Sbjct 5074 ACGCCCACGCTGTTTAACGCCGGCACGCCGCGTCCGCAGTTGTCGTCGTGCTTCCTGCTA 5133 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | | | | |||||||||| ||||| | ||||| |||||| | || ||| |||| Sbjct 5134 GCCATGCAAGACGACTCCATCGAGGGAATCTACGACACGCTCAAGCAGTGCGCGTGCATC 5193 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074 || || | || || || ||||| ||||| | ||| || | || || | |||| Sbjct 5194 TCCAAGTGGGCAGGAGGCATCGGCATCAGCATGCACAACATCCGAGCTACCAACAGCTAC 5253 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || ||||| ||||| ||| | ||||||||| || |||| ||||| || || |||||| || Sbjct 5254 ATTCGCGGCACCAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGCGTATTCAACGAC 5313 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 |||||||||||||||||||||| || || | | || || || ||||| || ||| | Sbjct 5314 ACGGCGCGCTACGTGGACCAGGGCGGAGGCAAACGCAAAGGCTCGTTCGCTGTGTATTTG 5373 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 || || |||||||| |||||| | ||| | |||||||| ||||||||||||||||| Sbjct 5374 GAACCGTGGCACGCAGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGAG 5433 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 || | | || | ||| | ||||| || || ||||| || || || || ||||| | Sbjct 5434 TTGCATCGAGCGCGCGACTTGTTCTATGCGCTATGGGTCCCTGATCTGTTCATGAAGAGG 5493 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 || ||| || | |||||| | || || ||||||||| ||| || || | ||| Sbjct 5494 GTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGCCCCAATGAAGCTCCGGGTCTTTACGAG 5553 Query 94375 GTTTGTGGA-TCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 || ||| || | |||||| | || | | |||||| | |||| || | Sbjct 5554 TGCTGGGGAGACGAG-TTTGAAACGCTCTACGAACAGTACGAAAAGGAGGGACGTGCACG 5612 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 || || |||| | | |||||| | ||| |||||| ||| | || || || Sbjct 5613 CAAAACCATCAATGCGCAGCAACTGTGGTTTGCCATCTTGGACGCTCAGATTGAAACAGG 5672 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 ||| | ||| | | ||| ||| | | |||| |||||| ||||||||| | || || Sbjct 5673 AGTGCCGTTCATGCTTTACAAAGACGCGGCCAACCGCAAGTCGAACCAGCAGAATCTGGG 5732 Query 94554 GGTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGA 94610 ||| |||| || ||||| |||| | | ||||| || ||||| || || Sbjct 5733 CACGAT---TCGCTCCAGCAACTTGTGCTGCGAGGTGATGGAGTACACGTCTCCAGATGA 5789 Query 94611 GATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACAC 94670 | || ||||| ||| ||| || | |||| ||| |||||| ||||| | Sbjct 5790 AGTGGCGGTGTGCAACTTGGCGTCTGTTGCCCTGCCCAAGTTCGTGGAAGATG-----GC 5844 Query 94671 GTCTACTGCT-TCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGA 94729 || | | || || | ||| | ||| |||| | | || || | | Sbjct 5845 GTGTTCAACTATC--AGAAACTGTACGAG---GTGACCAAAGTGG------TGACCCGCA 5893 Query 94730 ACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACC 94789 | ||||||| ||| || ||| |||| |||||| || || || || || ||| Sbjct 5894 ATCTGAACAAGGTGATTGACGTCAACTACTACCCGGTGGTAGAAGCTCGCAAGTCCAACA 5953 Query 94790 TGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGC 94849 || || || || | || || ||||| |||||| |||| |||||| | | | ||| Sbjct 5954 TGCGCCACCGCCCTGTGGGGATTGGCGTACAGGGTCTCGCTGACGCGTTCATTCTAATG- 6012 Query 94850 GTCTGCCC-TACGACTCTGTCGACG-CGGCGGGTTTGAATTTGAACATATTCGAAAGCAT 94907 || ||| | ||| | ||| | ||| | |||| |||||| ||||| | || Sbjct 6013 AACTACCCGTTCGAGAGCGAGAACGCCCGCGAG-CTGAACAAGAACATCTTCGAGACGAT 6071 Query 94908 TTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGA 94967 ||| |||| |||||| | || | | | |||| ||| || || | || Sbjct 6072 TTACTACGCTGCCATGGAGACGTCGATGGAGATTGCCA---AGGAATTGGGCCCGTATGA 6128 Query 94968 ATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026 | |||| || || |||| | | |||| | || || |||||| | ||||| || | Sbjct 6129 GACTTTCCAGGGTTC-CCCTGCTAGCAAGGGTGTCTTCCAATTCGACATGTGGGGCGTTA 6187 Query 95027 AGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTG 95083 | | || || |||| | ||||| || | | |||| |||||||| |||| Sbjct 6188 CCCCATCTTCTGGACTGTGGGCCTGGGGTGCGTTGAAGGAGAATGTGATCAAACATGGTG 6247 Query 95084 TGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCA 95143 | ||| |||| || | || || ||||| || || || || || ||||| ||||||| Sbjct 6248 TACGCAACTCGCTTCTAATTGCACCGATGCCTACTGCGTCTACTGCTCAGATTCTTGGCA 6307 Query 95144 ACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGG 95203 ||||||||||| |||| || | ||| || ||| |||| || | || ||| | || || | Sbjct 6308 ACAACGAGTCGATCGAGCCGTACACGTCGAACATGTATAATCGTCGTGTGTTGGCTGGCG 6367 Query 95204 AATTCCCCGTCATCAACAAGCACCT 95228 ||||| | || |||||||| |||| Sbjct 6368 AATTCACGATCGTCAACAAGTACCT 6392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494574541862440