Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq238 131 2e-25 seq321 116 4e-21 SEQ15627 111 2e-19 seq1885 102 8e-17 seq1 102 8e-17 >seq238 Length=29854 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | |||||||| || ||||||||||||||| Sbjct 20712 CCGCCGCGAAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 20771 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||| || ||||| | | |||| |||||||| ||||| ||||| Sbjct 20772 AGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 20831 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||||| || || | |||| || | | ||| | || |||||| Sbjct 20832 ATGCCTTCCTTGTCCTGAATTTTCTGCTTAACATTG-TCGATTGAGTCCGACGGCTCCAC 20890 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||| || || |||| || || ||||||||||||||| Sbjct 20891 GTCCAGAGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCATG 20939 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| ||| | || | | | |||||||| |||||||||||||| || Sbjct 20939 GCCACCACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACT 20998 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || |||||| ||||| || || | |||| || ||||| ||||| || || Sbjct 20999 CAGAGTGCGACCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGG 21058 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| || ||||| || | | || | | ||| | || ||||| Sbjct 21059 GATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCAC 21118 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | |||||||| || ||||| || || |||||||||||| Sbjct 21119 GTCGAGGGTAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCATG 21167 >seq321 Length=26016 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || || || | |||||||||| |||||||||||||| || Sbjct 9883 GCCACCACGGAGACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACT 9824 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| ||||| || || || || | | |||| || || |||||||| ||||| Sbjct 9823 CAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGG 9764 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| || || || || | | || | | ||| | || |||||| Sbjct 9763 GATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCAC 9704 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | || || || |||| || || ||||| ||||||||| Sbjct 9703 ATCCAACGTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCATG 9655 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| |||||| ||||| || || || || | Sbjct 9393 GACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCG 9334 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || ||||| ||||| |||||||| || | Sbjct 9333 AAGATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATTTTTTGCTTCACG 9274 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || ||| | || |||||| |||| || | || || || |||| ||| || Sbjct 9273 TTGTCGATGGAGTCCGACGGCTCCACGTCGAGTGTGATGGTCTTGCCGGTCAAAGTCTTC 9214 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 9213 ACGAAGATCTGCAT 9200 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| |||| |||||| ||||| || || || || | | Sbjct 9621 GACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCA 9562 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || |||||||| ||||| || ||||| ||||| || || || || | Sbjct 9561 AAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACG 9502 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || |||||| || | ||| | || || || |||| || || Sbjct 9501 TTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTTGCCGGTCAACGTCTTC 9442 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 9441 ACAAAGATCTGCATG 9427 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| ||||||| || || || || || || || |||| Sbjct 10077 GACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCTAGCTGCTTGCCGGCG 10018 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| ||||| || ||||| ||||| || || || || | | Sbjct 10017 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACA 9958 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | | ||||| || ||| || || | || | |||||||| || ||||| || Sbjct 9957 TTGT-CAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGTAAGAGTCTT 9899 Query 138600 TACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 9898 CACGAAAATCTGCATG 9883 >SEQ15627 Length=1670 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||||||| || || ||| ||||| || || || | | Sbjct 1406 GACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCA 1465 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||| ||||||| || | || ||||| ||||| ||||| || || | Sbjct 1466 AAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCCTGAATTTTCTGCTTGACG 1525 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || |||||| |||| ||| | || || || || || || || Sbjct 1526 TTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTCTTGCCGGTGAGGGTCTTC 1585 Query 138601 ACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 1586 ACAAAAATTTGCAT 1599 >seq1885 Length=10629 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || |||| ||| Sbjct 6245 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6186 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTT 138544 | || ||||| ||||| || || || ||||| ||||| |||||| || || | | | Sbjct 6185 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 6126 Query 138545 CCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 | | | |||||| || |||||| || | ||| | || || || ||||| || || |||| Sbjct 6125 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 6066 Query 138605 AAATCTGCATG 138615 | ||||||||| Sbjct 6065 AGATCTGCATG 6055 >seq1 Length=128069 Score = 102 bits (112), Expect = 8e-17 Identities = 295/450 (66%), Gaps = 17/450 (4%) Strand=Plus/Plus Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 ||||| || | |||||||| || || ||| | || || || ||| ||| | || Sbjct 111342 GAGCGTCTGCTCGCCTTCGCGGCGGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCC 111401 Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514 ||||| | | || | | || | ||||| || || | ||| |||||| | || Sbjct 111402 ATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCAGTTTCTCGAACGAGCTCATT 111461 Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACC 52574 || ||||| || |||||||||||||||| |||||| ||| || || ||||| | Sbjct 111462 AGCCGTGACGAGGGCATGCACACGGACTTTGCCTGCCTCATGTACTCGAAGCTCGTGAAC 111521 Query 52575 GAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG---GAGGCGGTGGCTATCGAA 52631 || || |||| | | || | | || | || || |||| ||||| Sbjct 111522 ---AAGCTGC---CGGAGAGCCGCGTGCACGAGATCGTGCGTGATGCTGTGGTGATCGAG 111575 Query 52632 AAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATG 52691 | |||||| | | |||||||||| ||||| | || |||||| || |||| Sbjct 111576 CATGAGTTTGTGCGCGATTCGCTGCCGGTGGAGCTCATCGGTATGAACTCGGGCCTCATG 111635 Query 52692 TGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG--GGCAGC--CAAA 52747 ||| ||||||| ||||| ||||| || || || | | |||| || || | || Sbjct 111636 TGCCAGTACATTGAGTTCGTGGCTGACCGCCTTCT----CTACTCGCTGGGAGTTTCCAA 111691 Query 52748 GTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGAC 52807 | || |||||| || || || || | ||| ||| || ||||| |||||||||| Sbjct 111692 GATCTACAACGCGAAGAACCCTTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGAC 111751 Query 52808 CAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||| ||||||||||| || |||||||| Sbjct 111752 CAACTTCTTCGAGAAGCGTGTGGGCGAGTA 111781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496113279352080