Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq321 96.9 2e-15 seq238 96.9 2e-15 SEQ15627 84.2 2e-11 >seq321 Length=26016 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || |||||||||||||| | | | | ||||||| || Sbjct 10086 TGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCTAGCTGC 10027 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | |||| |||||| ||||| ||||| ||||||||||| ||| || Sbjct 10026 TTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTC 9967 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || | ||| || ||||| | |||||| |||||||| || Sbjct 9966 TGCTTCACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGTA 9907 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||| ||||| Sbjct 9906 AGAGTCTTCACGAAAATCTGCAT 9884 >seq238 Length=29854 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | ||| | || ||||| || || || || |||||||| || | Sbjct 20938 TGCCACCACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAC 20997 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| | | |||| || | ||| ||||||||| | || | ||||| ||||| | Sbjct 20998 TCAGAGTGCGACCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGG 21057 Query 15068 GAATTCCTTCCTTGTCACAAA--TTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 | || ||||||||||| || |||||| || || | || || | || ||| Sbjct 21058 GGATGCCTTCCTTGTCTTGAATCTTTTGC--TTGACGTTGTCGATCGAGTCCGACGGTTC 21115 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| | |||||| |||||||| || ||||| || || ||||| ||||| Sbjct 21116 CACGTCGAGGGTAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCAT 21166 >SEQ15627 Length=1670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || |||||||| ||||| || | | ||||||| | || Sbjct 1397 TGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCGAGCTGC 1456 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | || | |||| ||||||| | |||||||||||||||| |||||| Sbjct 1457 TTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCCTGAATTTTC 1516 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || | || || ||||| | || || || || || || Sbjct 1517 TGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTCTTGCCGGTG 1576 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || || || |||||||||||||| || Sbjct 1577 AGGGTCTTCACAAAAATTTGCATCTT 1602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357287292967115