Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq238 134 1e-26 seq321 127 2e-24 SEQ15627 120 3e-22 seq1885 102 8e-17 seq1 93.3 4e-14 seq2671 91.5 1e-13 >seq238 Length=29854 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || |||||||||| | Sbjct 21396 CCACCACGCAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTC 21455 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || |||||| |||| | ||||||||||| || || Sbjct 21456 AGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 21515 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||||||||||||| |||| |||| | |||| ||| || Sbjct 21516 ATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTG-TCGATCGAATCCGACGGCTCCAC 21574 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| |||||||| || || || ||||| |||||||| Sbjct 21575 GTCGAGCGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 21622 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || | ||||| || | || ||||| || || || ||||| |||| Sbjct 20711 TCCGCCGCGAAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 20770 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||| || ||| || ||||| || ||||| |||| | |||||||| || ||||| Sbjct 20771 CAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGG 20830 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||||||||||| | | |||| | ||||| ||| || Sbjct 20831 GATGCCTTCCTTGTCCTGAATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGCTCCAC 20890 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| |||||||||| || || ||||||||||||||| Sbjct 20891 GTCCAGAGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCATG 20939 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||| || | || ||||| || ||||| ||||| || | | Sbjct 20940 CCACCACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTC 20999 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || || || || |||||| |||| | ||||||||| || || || Sbjct 21000 AGAGTGCGACCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGG 21059 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| || || ||||||| ||||| ||| | ||||| || || Sbjct 21060 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGT-CGATCGAGTCCGACGGTTCCAC 21118 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | ||||| || || ||||| || || |||||||||||| Sbjct 21119 GTCGAGGGTAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCATG 21167 >seq321 Length=26016 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||||| || |||||| ||| |||||||| || || Sbjct 10080 GTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCTAGCTGCTTGCCG 10021 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || ||||| ||||| ||||||||| || |||||||| Sbjct 10020 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTC 9961 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | | ||| | |||||| || | ||| | ||||| || || ||||| Sbjct 9960 ACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGTAAGAGTC 9901 Query 127097 TTTACAAAAATCTGCATG 127114 || || |||||||||||| Sbjct 9900 TTCACGAAAATCTGCATG 9883 >SEQ15627 Length=1670 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| || | ||||| || | ||| ||||| || ||||| ||||| |||| | Sbjct 1373 CCACCACGTAGACGAAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 1432 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || ||||| |||| | ||| | || || || | Sbjct 1433 AGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGA 1492 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||||||||||||| |||| |||| | ||||| ||| || Sbjct 1493 ATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTG-TCGATCGAGTCCGACGGCTCCAC 1551 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || |||||||| || || || |||||||| ||||| Sbjct 1552 GTCGAGCGTGATTGTCTTGCCGGTGAGGGTCTTCACAAAAATTTGCAT 1599 >seq1885 Length=10629 Score = 102 bits (112), Expect = 8e-17 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 6243 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6184 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 | |||||||| || || || ||||| ||||||||| |||||||||||||| |||| || Sbjct 6183 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTG-TC 6125 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 6124 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 6065 Query 127105 AATCTGCATG 127114 ||||||||| Sbjct 6064 GATCTGCATG 6055 >seq1 Length=128069 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | ||| | ||||||| || || || || |||||||| ||| Sbjct 111615 GGTATGAACTCGGGCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGCCTTCTCTAC 111674 Query 47472 CAGCTAA-AGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 ||| ||| ||| ||||| ||| || | |||| || ||||| | ||| ||| || Sbjct 111675 TCGCTGGGAGTTTCC-AAGATCTACAACGCGAAGAACCCTTTCGACTGGATGGACATGAT 111733 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||| |||||||||||||||| ||||||||||| || ||||| || Sbjct 111734 CTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 111781 >seq2671 Length=8519 Score = 91.5 bits (100), Expect = 1e-13 Identities = 218/324 (67%), Gaps = 17/324 (5%) Strand=Plus/Minus Query 147070 TGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTACC---GCCCTGATCGACG 147126 ||||| || |||| || | |||| | |||||| || || || |||||| || ||| Sbjct 5384 TGCCACGGTTCCAAATACACAGCGAACGAGCCTTTGCGTTTGCCTCCGCCCTGGTCCACG 5325 Query 147127 TGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTTTG---TG 147183 | |||| || ||| ||||| || || | ||||| | || |||| ||| || Sbjct 5324 TAGCGCGCCGTGTCGTTGAATACGCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTG 5265 Query 147184 GTGCCGT---TGTA----TTG--AGCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCC- 147233 |||||| |||| ||| ||| | || | | |||| ||| | |||| ||||| Sbjct 5264 GTGCCGCGAATGTAGCTGTTGGTAGCTCGGATGTTGTGCATGCTGATGCCGATGCCTCCT 5205 Query 147234 GCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTC 147293 ||||| || || || | ||| ||| | | || | |||||| || |||||| ||| Sbjct 5204 GCCCAC-TTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATTCCCTCGATGGAGTC 5146 Query 147294 TTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAA 147353 || | ||| | ||||||| ||||| ||| || ||||| |||||| || ||| Sbjct 5145 GTCTTGCATGGCTAGCAGGAAGCACGACGACAACTGCGGACGCGGCGTGCCGGCGTTAAA 5086 Query 147354 CAGCGTGGGGCTGGCGTGCGTGAA 147377 ||||||||| |||| |||||||| Sbjct 5085 CAGCGTGGGCGTGGCATGCGTGAA 5062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475357917953360