Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2671 129 5e-25 seq321 107 2e-18 seq238 95.1 1e-14 SEQ15627 87.8 2e-12 >seq2671 Length=8519 Score = 129 bits (142), Expect = 5e-25 Identities = 292/433 (67%), Gaps = 7/433 (2%) Strand=Plus/Plus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACG-GACGCGACATCGAAAACGCGAC 122974 || || ||| |||||||||| || | ||| | ||| ||| ||||||| | ||| Sbjct 4972 CAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGAC-CGACATCCAGGCGGCGCT 5030 Query 122975 CGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGC 123034 | || ||||| | ||||| || || || |||||||| || | ||||| |||| Sbjct 5031 GCAGACGTACGAGCTCATGTCGCAGAAGTTCTTCACGCATGCCACGCCCACGCTGTTTAA 5090 Query 123035 CGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAG 123094 |||||||||| | || |||||||| ||||| || |||| || ||| || ||| Sbjct 5091 CGCCGGCACGCCGCGTCCGCAGTTGTCGTCGTGCTTCCTGCTAGCCATGCAAGACGACTC 5150 Query 123095 CATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGG 123154 |||| || ||||| || || | | ||||||| || ||||| | | || || Sbjct 5151 CATCGAGGGAATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCAGGAGG 5210 Query 123155 CATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGG 123214 ||| ||| | | | ||||| || | ||| | ||| ||| | ||||| |||| Sbjct 5211 CATCGGCATCAGCATGCACAACATCCGAGCTACCAACAGCTACATTCGCGGCACCAACGG 5270 Query 123215 AATCG-CCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCG 123273 ||| || ||| || |||||||||| || | ||| || | | ||| |||| | Sbjct 5271 C-TCGTCCAACGGCATCATCCCCATGCTGCGCGTATTCAACGACACGGCGCGCTACGTGG 5329 Query 123274 ACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTG 123330 |||||||||| ||||||||||||| || | || | ||| | ||||||||||||| | Sbjct 5330 ACCAGGGCGGAGGCAAACGCAAAGGCTCGTTCGCTGTGTATTTGGAACCGTGGCACGCAG 5389 Query 123331 ATGTGTACGATTT 123343 | |||| ||| || Sbjct 5390 ACGTGTTCGAGTT 5402 >seq321 Length=26016 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | ||| || || || || || ||||| ||||| || |||||||| Sbjct 10110 CCTCCACGCAGGCGAAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTC 10051 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | || || || ||| | |||| || |||||||| || ||| Sbjct 10050 AATGTGCGACCATCTTCTAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 9991 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || ||||| || || || | || | | |||||| | |||||| Sbjct 9990 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATCGAGTCGGACGGCTCGACG 9931 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||||| || || ||||| || || ||||| ||||| Sbjct 9930 TCCAGGGTAATAGTTTTACCCGTAAGAGTCTTCACGAAAATCTGCAT 9884 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || |||| ||| || ||||| ||||| || || ||||| | || ||| || Sbjct 9409 CACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCATCCTC 9350 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | || | || |||||||| || ||||| ||||| || || || Sbjct 9349 TAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTG 9290 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||||| || | || | || | || ||| || | ||| || ||||| || | || | Sbjct 9289 AATTTTTTGCTTCA-CGTTGTCGATGGAGTCCGACGGCTCCACGTCGAGTGTGATGGTCT 9231 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||| | ||| || || || || |||||| Sbjct 9230 TGCCGGTCAAAGTCTTCACGAAGATCTGCATC 9199 >seq238 Length=29854 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || |||| ||| |||||||| ||||| || || || Sbjct 21165 ATGCCACCACGGAGACGAAGCACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCA 21224 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | || || | || || || ||| | || | ||| |||||||| || Sbjct 21225 CTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGG 21284 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||||||||| || ||||| || || |||| || | || | | || |||| ||| Sbjct 21285 GGGATGCCTTCTTTGTCCTGAATCTTCTGCTTGA-CGTTGTCGATCGAATCTGAAGGCTC 21343 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||| |||||||| | || || || || || ||||| Sbjct 21344 TACATCCAATGTGATCGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 21394 >SEQ15627 Length=1670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || ||||| || ||||| || || || || ||||| | ||| | || || Sbjct 1390 CACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCTTC 1449 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || || | || | || | ||||| || |||| ||||| || || || Sbjct 1450 GAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCCTG 1509 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||||| || |||| || | || | | ||| || | ||| || ||||| || | || | Sbjct 1510 AATTTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTCT 1568 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||| || || || ||||||||||||||| Sbjct 1569 TGCCGGTGAGGGTCTTCACAAAAATTTGCATC 1600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451867378688440