Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2671 172 7e-38 seq1 145 9e-30 seq43 105 8e-18 seq7045 95.1 1e-14 >seq2671 Length=8519 Score = 172 bits (190), Expect = 7e-38 Identities = 393/583 (67%), Gaps = 9/583 (2%) Strand=Plus/Minus Query 116641 GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTC 116699 || || ||||||| ||||||| | |||||| | |||||||| || ||| |||| ||| Sbjct 5609 GCACGTCCCTCCTTTTCGTACTGTTCGTAGAGCGTTTCAAACTCGTCTCCC-CAGCACTC 5551 Query 116700 TGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCG 116759 | || || || || | || || ||||| | | ||| | ||| |||| |||| Sbjct 5550 GTAAAGACCCGGAGCTTCATTGGGGCAGAACAAACTCCACTTGCCATTGGCCTCCACCCT 5491 Query 116760 CTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTT 116818 ||||||||| || || |||| ||| ||||| |||| | || || ||| || || Sbjct 5490 CTTCATGAACAGATCAGGGACCCATAGCGCATAGAACAAGTCGCGCGCTCGATGCAACT- 5432 Query 116819 CATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCA 116878 | | || || || |||| |||| || || | | || |||||||||||||||| Sbjct 5431 CGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCTGCGTGCCACGGTTCCA 5372 Query 116879 GGTACACCGCGATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTG 116935 ||||| |||| || || ||||| | || |||||| || || | |||||| Sbjct 5371 AATACACAGCGAACGAGCCTTTGCGTTTGCCTCCGCCCTGGTCCACGTAGCGCGCCGTGT 5312 Query 116936 CGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATAC 116995 |||| |||||||| ||||| || ||||| || | || ||| || || || ||||| Sbjct 5311 CGTTGAATACGCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTGGTGCCGCGAATGT 5252 Query 116996 GAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 117055 ||| | |||| || | ||| ||| || || || || ||||||||||| |||| Sbjct 5251 AGCTGTTGGTAGCTCGGATGTTGTGCATGCTGATGCCGATGCCTCCTGCCCACTTGGAGA 5192 Query 117056 TTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 117115 | ||||||| | |||| || ||||||| || ||||| ||||| | | | || | Sbjct 5191 TGCACGCGCACTGCTTGAGCGTGTCGTAGATTCCCTCGATGGAGTCGTCTTGCATGGCTA 5132 Query 117116 TGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 117175 |||||||| ||||| || || | || || || ||||| || || || || || | Sbjct 5131 GCAGGAAGCACGACGACAACTGCGGACGCGGCGTGCCGGCGTTAAACAGCGTGGGCGTGG 5072 Query 117176 CGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCA 117217 | || |||| | || | || ||||| ||||| |||| || Sbjct 5071 CATGCGTGAAGA-ACTTCTGCGACATGAGCTCGTACGTCTGCA 5030 >seq1 Length=128069 Score = 145 bits (160), Expect = 9e-30 Identities = 357/532 (67%), Gaps = 17/532 (3%) Strand=Plus/Minus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 111793 CCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAG 111734 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| | || || |||||||| | ||| | || | | || || | | Sbjct 111733 ATCATGTCCATCCAGTCGAAAGGGTTCTTCGCGTTGTAGATCTTGGAAACTCCCAGCGAG 111674 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | ||| || || || | ||| |||||||||||| |||| | |||||||||||| Sbjct 111673 TAGAGAAGGCGGTCAGCCACGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATACCG 111614 Query 127400 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGT 127459 ||||| | || |||| || | ||| | | ||| || ||||||| || || Sbjct 111613 ATGAGCTCCACCGGCAGCGAATCGCGCACAAACTCATGCTCGATCACCACAGCATCACGC 111554 Query 127460 ACGATGGCGTGAATAGTGTCCACCC-CAGGTCTATT-----GCGTAAAGT-CTTGAAGAG 127512 ||||| |||| | | | || ||| | | || || | ||| | ||| | Sbjct 111553 ACGATCTCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACGAGCTTCGAGTACATGAGG-- 111497 Query 127513 TTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCA 127572 || ||||| || ||| | |||||||||||| ||||| || |||||||| | Sbjct 111496 ---CAG-GCAAAGTCCGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAACT 111441 Query 127573 CAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAA 127632 ||||| ||||||||||| |||||||| | |||||| || | || || ||||| ||||| Sbjct 111440 GAGACCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAA 111381 Query 127633 GAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTG 127691 |||||| || ||||| |||||| || | |||||||| | | | ||| | || | Sbjct 111380 GAAGATGCCTTCCACCGCCGCGAAGGCGAGCAGACGCTCCGGATACGAG-GACACACGAG 111322 Query 127692 TATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743 || |||| | ||||| ||||| || |||| || |||||||| ||| Sbjct 111321 GGTCGCACCATCGGAGAGCCCAGTGTGCTTTCTTCTTGACACATGGGATGGT 111270 >seq43 Length=56266 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 176782 GAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACC 176841 |||||||||||||| || ||||| ||||| | || ||||| |||||||| ||||| Sbjct 26136 GAGTTGCGCCACTGTTGCATCGCGCACATTGAGAAGTTTACCGCGAAGAGGGAAAACACC 26195 Query 176842 GTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACC 176901 ||| ||||| || ||||| || | || || || ||||| || | || |||||||| || Sbjct 26196 GTACTGATCGCGTCCAACAACTGCAAGGCCTGCCACTGCAAGTGCTTTGGCGGAATCGCC 26255 Query 176902 CTCCGTCACGATGAGCGTACACT 176924 ||||||| ||||| | ||||| Sbjct 26256 TTCCGTCAAAATGAGTGCACACT 26278 >seq7045 Length=3816 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 || || ||| ||| | ||| |||||||| ||| | ||||||||||||| ||||| Sbjct 2757 GCGAAGTCTGTGTGCATACCTTCGTCACGACTGATCATCTCATTCGAGAAGCTGAGACCA 2816 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | ||||||||| || || || || || |||||||| Sbjct 2817 GGCATGAGGCCTCGCTTCTTGAGCCAGAAAATGCTGCAGAACGACCCCGAAAAGAAGATA 2876 Query 127640 CCCTCCACACACGCGAACGC 127659 || ||||| | || ||||| Sbjct 2877 CCTTCCACTGAAGCAAACGC 2896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613322848755240