Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq321 165 2e-35 SEQ15627 138 3e-27 seq238 136 9e-27 seq1885 107 5e-18 seq8293 96.9 8e-15 >seq321 Length=26016 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||||||||||||||| |||| |||||| || ||| || | |||||| Sbjct 10095 AGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCT 10036 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| |||||||||||||| ||| ||| ||||| ||| Sbjct 10035 TCTAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 9976 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||||| || | | ||| | | || || |||| || || || Sbjct 9975 TGAATCTTCTGCTTCACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTT 9916 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| ||||| ||||| ||||| || Sbjct 9915 TTACCCGTAAGAGTCTTCACGAAAATCTG 9887 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| | ||||||||||| |||| ||||||||| || ||| | |||||| Sbjct 9411 AGCACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCATCC 9352 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||| ||||||||||| || ||||||||| ||| Sbjct 9351 TCTAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCC 9292 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| |||||||||||| |||| || ||| | | || || || | ||||| ||| Sbjct 9291 TGAATTTTTTGCTTCACGTTGTCGATGGAGTCCGACGGCTCCACGTCGAGTGTGATGGTC 9232 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| ||||| || || || Sbjct 9231 TTGCCGGTCAAAGTCTTCACGAAGATCTG 9203 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || |||||||| ||||||||||| || | |||||||||| || ||| Sbjct 9648 CGAAGGCGAAGCACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTA 9589 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || |||||||| || || |||||||| || || ||||| ||| || ||| Sbjct 9588 CGTCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCT 9529 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||||| || | | ||| | | || ||||||||| Sbjct 9528 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAAC 9469 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || |||||||| || || Sbjct 9468 GTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTG 9431 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| ||||| |||||||| || | |||||||||| || ||| Sbjct 9876 CGGAGACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACTCAGAGTA 9817 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || |||||||| || || |||||||| || || ||||| ||| || ||| Sbjct 9816 CGTCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCT 9757 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||||| || | | ||| | | || ||||||||| Sbjct 9756 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAAC 9697 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || |||||||| || || Sbjct 9696 GTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTG 9659 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||||||||| |||||| | |||||||| | || ||| |||||||||| ||||| Sbjct 10010 CTGATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGCACATTGAGCGATTACAACATCCAG 10069 Query 200995 AAAGAGTCTACTCTTCACCTTGT 201017 || ||||| ||||| |||||||| Sbjct 10070 AAGGAGTCGACTCTCCACCTTGT 10092 >SEQ15627 Length=1670 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| || | ||||||||| || || | || ||| Sbjct 1388 AGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCT 1447 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || |||||||||||| | ||||| || ||||||||| ||| Sbjct 1448 TCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCC 1507 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || ||||| ||| |||| | ||| | | || || || | |||||| ||| Sbjct 1508 TGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTC 1567 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || |||||||||||||| Sbjct 1568 TTGCCGGTGAGGGTCTTCACAAAAATTTG 1596 >seq238 Length=29854 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || ||||||||||| |||| ||||||||| || || Sbjct 20718 CGAAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTA 20777 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || |||||||||||||||||||| ||| || ||| Sbjct 20778 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATGCCT 20837 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||| || ||||| || |||| | ||| | | || || |||| Sbjct 20838 TCCTTGTCCTGAATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGCTCCACGTCCAGA 20897 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || | || ||||||||||| || Sbjct 20898 GTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTG 20935 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| |||||| || || || | ||||| Sbjct 21411 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCC 21470 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| ||||||||||| || || ||||||||| ||| Sbjct 21471 TCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCC 21530 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || ||||| ||| |||| | || | | || || || | |||||||||| Sbjct 21531 TGAATTTTCTGCTTGACGTTGTCGATCGAATCCGACGGCTCCACGTCGAGCGTGATCGTC 21590 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || |||||||| || || Sbjct 21591 TTGCCGGTGAGGGTCTTCACAAAGATCTG 21619 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| || | |||||||||| || ||| Sbjct 20946 CGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTG 21005 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || ||||| || ||||||||||| ||||||||||| || || ||| Sbjct 21006 CGACCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCT 21065 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||||||||| ||| |||| | ||| | | ||| || || | Sbjct 21066 TCCTTGTCTTGAATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCACGTCGAGG 21125 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||| ||||| || || ||||| || Sbjct 21126 GTAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTG 21163 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| | || || ||||| |||| |||||||||| || || | || || Sbjct 21183 AGCACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCC 21242 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||| ||||||||||| || || |||||| ||| Sbjct 21243 TCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCC 21302 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||| ||| |||| | |||| | ||||||||||| ||||||||| Sbjct 21303 TGAATCTTCTGCTTGACGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGTC 21362 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 21363 TTGCCGGTCAACGTCTTGACGAAGATCTG 21391 >seq1885 Length=10629 Score = 107 bits (118), Expect = 5e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | || || || |||||||| |||||||||| Sbjct 6245 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6186 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||||||||| || || ||||| ||||| || || ||||| ||| | Sbjct 6185 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 6126 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||| | | || || |||| |||||| ||||| ||||| || || ||||||| Sbjct 6125 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 6066 Query 199620 AAATTTG 199626 | || || Sbjct 6065 AGATCTG 6059 >seq8293 Length=3242 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| ||||||||| | || || | || || Sbjct 2554 AGCACTAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCC 2495 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||| || |||||||| |||||||||||||| || ||||||| Sbjct 2494 TCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGAATTCCT 2444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178558492515613