Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1885 170 2e-37 seq238 114 1e-20 seq321 111 2e-19 SEQ15627 105 8e-18 seq8293 89.7 6e-13 >seq1885 Length=10629 Score = 170 bits (188), Expect = 2e-37 Identities = 154/191 (81%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| | Sbjct 6245 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6186 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | ||| | || ||||||||| ||| |||| ||||| ||| | Sbjct 6185 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CGTTG 6127 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | ||||| || ||||| |||| ||||||||| ||||||||||| || || ||| Sbjct 6126 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 6067 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 6066 AAGATCTGCAT 6056 >seq238 Length=29854 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | ||| || ||||| || ||||| ||||| |||||||| Sbjct 21166 TGCCACCACGGAGACGAAGCACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCAC 21225 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| |||||||||||||| ||||| || | ||||||||||| | | Sbjct 21226 TCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGG 21285 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || || |||||| ||||||| ||||| ||| | | | || || | || Sbjct 21286 GGATGCCTTCTTTGTCCTGAATCTTCTGCTTGA-CGTTGTCGATCGAATCTGAAGGCTCT 21344 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| ||||| || ||||| |||| ||| || || ||||| ||||| Sbjct 21345 ACATCCAATGTGATCGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 21394 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | |||||| |||| || |||||| ||||| ||||| ||| Sbjct 21394 TGCCACCACGCAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGC 21453 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || | || |||||||||||||| ||||| || | |||||||| || | | Sbjct 21454 TCAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGG 21513 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | ||||||||| || |||| ||||| ||| | | | || || || ||| Sbjct 21514 GAATTCCTTCCTTGTCCTGAATTTTCTGCTTGA-CGTTGTCGATCGAATCCGACGGCTCC 21572 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || | |||||| || ||||| || || || || |||||||| ||||| || Sbjct 21573 ACGTCGAGCGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTT 21625 Score = 105 bits (116), Expect = 8e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| |||| || |||||| || || |||||||| Sbjct 20938 TGCCACCACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAC 20997 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 |||||||| |||| || || |||||||| ||||| || | ||||||||||| | | Sbjct 20998 TCAGAGTGCGACCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGG 21057 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || |||||||| ||||| | ||||| ||| | | | || ||| || |||| Sbjct 21058 GGATGCCTTCCTTGTCTTGAATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGTTCC 21116 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | || || ||||| ||||| || || || || || || ||||| Sbjct 21117 ACGTCGAGGGTAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCAT 21166 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || || || | | ||| | |||||| |||| || |||||| ||||| ||||| Sbjct 20705 TTAGTTTCCGCCGCGAAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTA 20764 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| || || || | || ||||||||||| || || || || | ||||||||||| Sbjct 20765 GTCGCTCAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTC 20824 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || ||||||||| || |||| ||| | | | | | ||| || Sbjct 20825 AGGAGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTAACATTGTCGATTGAGTCCGACGG 20884 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| ||||| || ||||| |||| || || ||||| || ||||| Sbjct 20885 CTCCACGTCCAGAGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 20938 >seq321 Length=26016 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| || | || |||||| || || |||||||| Sbjct 9884 TGCCACCACGGAGACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAC 9825 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||||| || | || || ||||||||||| || || || | || || ||||| | | Sbjct 9824 TCAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAG 9765 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || ||||||||| ||||||| ||| | ||| | | | | ||| || ||| Sbjct 9764 GGATGCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCAATTGAGTCCGACGGCTCC 9706 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| ||||||||| ||||| |||| ||| || |||||||| ||||| Sbjct 9705 ACATCCAACGTGATGGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9656 Score = 109 bits (120), Expect = 6e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | ||| || ||||| || |||||| ||||| ||||||||| Sbjct 9428 TGCCACCACGCAGACGAAGCACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGC 9369 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||||| || | || || ||||||||||| ||||| || | |||||||||||| | | Sbjct 9368 TCAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGG 9309 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | ||||||||| || || | ||| | ||| | | | | ||| || ||| Sbjct 9308 GAATTCCTTCCTTGTCCTGAATTTTTTGCTTCA-CGTTGTCGATGGAGTCCGACGGCTCC 9250 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || || | |||||||| ||||| |||| || || || ||||| ||||| ||| Sbjct 9249 ACGTCGAGTGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCATCTTG 9196 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| || || |||||||| ||||| || | || || Sbjct 9637 CACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCCTC 9578 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || || || | || || ||||| | || | || ||||||||| Sbjct 9577 TAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTG 9518 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||||| ||| | ||| | | | | ||| || |||||||||| ||||||||| | Sbjct 9517 AATCTTCTGCTTCA-CGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCT 9459 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||| ||| || |||||||| ||||| Sbjct 9458 TGCCGGTCAACGTCTTCACAAAGATCTGCAT 9428 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| |||||||| | | || | ||| || || | || |||||| ||||| ||||| Sbjct 10117 TTAATTGCCTCCACGCAGGCGAAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTA 10058 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| | ||||| | || || ||||||||||||||||| |||| ||||||||||| Sbjct 10057 ATCGCTCAATGTGCGACCATCTTCTAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 9998 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || ||||||||| ||||||| ||| | | | | || |||| || Sbjct 9997 AGGAGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATTGTCAATCGAGTCGGACGG 9938 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| || || ||||| ||||| || || || || || || ||||| Sbjct 9937 CTCGACGTCCAGGGTAATAGTTTTACCCGTAAGAGTCTTCACGAAAATCTGCAT 9884 >SEQ15627 Length=1670 Score = 105 bits (116), Expect = 8e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || | || ||| | |||||| || | || |||||| || || ||||||||| Sbjct 1372 GCCACCACGTAGACGAAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 1431 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || ||||| |||| |||||||||||||| || || || | ||| | ||||| | | Sbjct 1432 CAGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTG 1491 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 46544 | | ||||||||| || |||| ||||| ||| | | | || ||| || |||| Sbjct 1492 AATTCCTTCCTTGTCCTGAATTTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCA 1550 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | || | |||||| || ||||| || || || || ||||| |||||||| || Sbjct 1551 CGTCGAGCGTGATTGTCTTGCCGGTGAGGGTCTTCACAAAAATTTGCATCTT 1602 >seq8293 Length=3242 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| || |||| || |||||| ||||| |||||||| || || ||||| | Sbjct 2558 ACGGAGCACTAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCC 2499 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| |||||||||||||| ||||| |||| ||||||||||| Sbjct 2498 GTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 2457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565068552926280