Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq772 149 2e-30 seq321 102 3e-16 seq43 95.1 5e-14 seq238 93.3 2e-13 >seq772 Length=17468 Score = 149 bits (164), Expect = 2e-30 Identities = 811/1271 (64%), Gaps = 47/1271 (4%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 || || || || || || ||||| || | |||||| || ||||||||| || ||| Sbjct 5089 CCGGAGGAGATCTCGTCCATGGTGCTGATCAAAATGCGCGAGACAGCAGAAGCCTACATT 5030 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || | ||| | | ||||| | || ||||| || ||||| |||||| | || || Sbjct 5029 GGGAAGCAAGTGAAGAACGCAGTGGTGACAGTTCCAGCATATTTTAATGATTCGCAGCGC 4970 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 ||||| || |||||||| ||| ||||||||||| || || || || || || ||||| Sbjct 4969 CAAGCGACCAAAGATGCCGGAGTAATTGCTGGTTTGAACGTGCTGCGTATCATCAATGAG 4910 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaT 451483 || || || |||||| | || ||||| |||| ||| | | | ||| | ||| Sbjct 4909 CCGACGGCTGCTGCTATTGCCTATGGTCTAGA-----CAAGCGGGGCGGC-GAACACAAT 4856 Query 451484 ATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGAT 451543 | || | |||||| | || || ||||| |||| || |||| | |||||||| Sbjct 4855 GTGTTGATTTTTGATCTAGGCGGCGGAACGTTTGATGTGTCGCTACTAACGATTGAAGAA 4796 Query 451544 GGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || | ||||| || ||||| || ||||| || || | ||||||||||| |||| Sbjct 4795 GGCATCTTTGAGGTGAAGGCGACGGCAGGTGACACGCACTTGGGAGGTGAAGACTTTGAC 4736 Query 451604 AATGCAATTGTGGAATGGTTGAAAACTGATGTTCAACGAAAACTA---AAAGTAGATATT 451660 || |||| || | || | || |||||| |||| || ||| ||||| Sbjct 4735 AACCGTCTTGTCGAGTATTTTGTGGCGGA-GTTCAAGCAAAAATATCGCAAG--GATATG 4679 Query 451661 TCTACTAACCAAAAAGCACTTAGACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACA 451720 || ||||| |||||| | ||||| || | || ||||| || Sbjct 4678 TCAGTGAACCAGCGTGCACTTCGCCGTCTCCGGACTGCTTGCGAGCGTGCTAAGCGCACT 4619 Query 451721 CT---CAGTTCAACACAAACTACTAGTATAAACATTGATAGTTTAGTTGATGGAATGGAT 451777 | || ||| | ||| | ||| || | || ||| || |||||||||| ||| Sbjct 4618 TTGTCCACTTCGGCGCAAGC--CTA-CATCGAGATCGATTCGTTGTTTGATGGAATTGAT 4562 Query 451778 TATGCTACTACTCTTACCCGTGCTAAATTTGAATCAATT-TGTTCCAG-TATTTTTGCAC 451835 | | | || |||| ||||| | ||| | | || ||| | || || ||| ||| Sbjct 4561 TTCAATTCCACCATTACACGTGC-ACGTTTCGAGGACTTGTGTGCTAGTTACTTTCGCA- 4504 Query 451836 GGGTAATGAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGT-AAAGATAAAATT 451894 | |||| ||||||| | ||||| ||| ||| || ||| | || |||| || | Sbjct 4503 AGACAATGGAACCTGTCGCCCAAGTTCTACGTGACTCCAAACT--GTCGAAGAGCCAAGT 4446 Query 451895 G-ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT--- 451950 | | || ||||| | || || || || || ||||| || || | || | |||| Sbjct 4445 GAACGAGATTGTCTTGGTTGGTGGATCGACGCGAATCCCAAAGGTGCAGCAGTTGTTGAT 4386 Query 451951 -GTCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTG 452009 | |||||| | || ||| | || | ||| | || || || || ||||| | Sbjct 4385 GGACTTCTTCAAT----GGCAAAGATCTGTTCAAGTCGATTAACCCGGACGAGGCTGTGG 4330 Query 452010 CATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGT-TCAGATGATGA--AAAATTAG 452066 |||| || ||| | |||||||| || ||||| | ||| ||| | | || || Sbjct 4329 CATACGGGGCTACCGTTCAAGCTGCAATTCTCAGTGGTAGTGGATCTTCATCCAAGTTGC 4270 Query 452067 GAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAA 452126 |||| | ||| | | || || | || |||| || ||| | ||||| || |||||| Sbjct 4269 AAGATCTGCTGCTTCTCGACGTTGCCCCGTTATCGCTCGGACTGGAAACTGCAGGTGGAG 4210 Query 452127 TGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATT-T 452185 | ||||| || | ||| ||| ||| | ||||| || || || | || | Sbjct 4209 TCATGACCAAGCTCATTCCACGTAACACTACGGTTCCTGCCAAGAAATCGCAGTCGTTCT 4150 Query 452186 AG---TACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGT 452242 | ||| ||| ||||||||| | || || || |||||||| ||||| ||||| Sbjct 4149 CGACTTAC-GCA---GATAACCAAGCTGGAGTGTTGATCCAAGTGTTCGAAGGTGAACGC 4094 Query 452243 GCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATG 452302 | |||| || ||||| || || || | |||| ||| || || || ||| Sbjct 4093 ACCTTGACCCGTGATAACCATCTCCTGGGGAAGTTTAATCTGGACGGGATCCCACCCATG 4034 Query 452303 CCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAAT 452362 || | |||| ||| |||||||| | || | ||||||||| | ||||| ||| | || Sbjct 4033 CCGCGTGGAATTCCCCAAATTGACGTCACTTTTGATGTTGACGTCAATGGGATTTTGAAC 3974 Query 452363 GTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAA 452421 ||| || || || ||||| | || || |||| || || || || || ||||| || Sbjct 3973 GTGTCGGCGGTGGAGAAATCGAC-GGGGAAGGAGAACAAGATCACGATCACCAATGACAA 3915 Query 452422 AAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGA 452481 | ||||| || | || || || ||||| | || || ||||| | |||||| Sbjct 3914 AGGACGTTTGTCCCAGTCGGAGATCGACCGCATGGTGGCAGACGCTGAAAAGTACAAGGA 3855 Query 452482 TGATGATGAAC 452492 | | ||||||| Sbjct 3854 TCAAGATGAAC 3844 >seq321 Length=26016 Score = 102 bits (112), Expect = 3e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || |||||||||||||| || || || || | || Sbjct 9884 ATGCAGATTTTCGTGAAGACTCTTACGGGTAAAACTATTACCCTGGACGTCGAGCCGTCC 9943 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | | || || || ||||| || |||||||| ||||||||||| || Sbjct 9944 GACTCGATTGACAATGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAG 10003 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || |||||||| | || ||| ||||| || Sbjct 10004 CAGCGTCTGATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGCACATTGAGCGATTACAAC 10063 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 10064 ATCCAGAAGGAGTCGACTCTCCAC 10087 >seq43 Length=56266 Score = 95.1 bits (104), Expect = 5e-14 Identities = 199/297 (67%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 364737 ATGGCACAAAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTT 364796 |||||||| | |||||||| ||||| | |||| | ||| ||| || ||| Sbjct 25325 ATGGCACAGGACTTTGTTGGTTCCAATAACCTCCCGCTACTGTACCCATCAGGTCAGTTT 25266 Query 364797 GGAAGTCGAGTAATGGGAGGTAAAGATTCTGCCAGCCCACGTTATATTTGGACCAAACTT 364856 |||| || | || || || ||| |||| ||||| |||||||| | || ||| Sbjct 25265 GGAACACGGTTGCAAGGCGGAAAGGATGCTGCTAGCCCGCGTTATATCTTCACGCTACTG 25206 Query 364857 GAAAAAGTGGCAGGATTAATATTTAGAAAAGAAGATAATCCAATTTTAAATTATATTAAT 364916 |||| | | || ||||| |||||||| || || |||| ||| || Sbjct 25205 CAAAAGCACACTCGTTTGGTATTTCCTGAAGAAGATGATGCACTTTTGCGTTACGCCGAT 25146 Query 364917 GATGATGGATTAATGGTTGAACCTGAATTTTATCTTCCTATTATTCCTATGATTTTAGTA 364976 |||||||| || |||||||| | || ||| ||||||| || || ||| | | ||| Sbjct 25145 GATGATGGCTTCCCAGTTGAACCCGTATATTACGTTCCTATCATCCCAATGTTGCTCGTA 25086 Query 364977 AATGGAGCAACAGGCATTGGTACTGGTTTCTCCACCTCAATCCCTTGTTACCATCCA 365033 ||||| || || ||||||||||||| || | || ||||||||| |||||||| Sbjct 25085 AATGGCGCGGAGGGAATTGGTACTGGTTGGTCTTCATCGATCCCTTGTCACCATCCA 25029 >seq238 Length=29854 Score = 93.3 bits (102), Expect = 2e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || |||||||||||||| || || || ||| | || Sbjct 21166 ATGCAGATTTTCGTCAAGACTCTTACGGGTAAAACTATTACCCTCGACGTGGAACCGTCG 21107 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || || || | || ||||| |||||||| |||||||| || || ||||| || Sbjct 21106 GACTCGATCGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGCATCCCCCCTGACCAG 21047 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || ||| | || || |||||||| || || | ||| || || || || Sbjct 21046 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGACGGTCGCACTCTGAGTGACTACAAC 20987 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | ||||| | || || ||| Sbjct 20986 ATTCAGAAGGAGTCGACCCTGCAC 20963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975109879350212