Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq772 300 1e-75 >seq772 Length=17468 Score = 300 bits (332), Expect = 1e-75 Identities = 964/1480 (65%), Gaps = 27/1480 (2%) Strand=Plus/Plus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 || ||||| || | || | ||| || | ||| |||||| | || | |||||| ||||| Sbjct 3951 GTCGATTTCTCCACCGCCGACACGTTCAAAATCCCATTGACGTCAACATCAAAAGTGACG 4010 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 |||||||| || | || | | | ||||||||||| |||| |||||| | ||||| Sbjct 4011 TCAATTTGGGGAATTCCACGCGGCATGGGTGGGATCCCGTCCAGATTAAACTTCCCCAGG 4070 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 || ||||| || || | |||||||| ||||| | |||||| ||| ||| | Sbjct 4071 AGATGGTTATCACGGGTCAAGGTGCGTTCACCTTCGAACACTTGGATCAACACTCCAGCT 4130 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCT 517482 || ||||||| ||||| | || ||| ||||| || ||||| || ||||| | Sbjct 4131 TGGTTATCTGCGTAAGTCGAGAACGA-CTGCGATTTCTTGGCAGGAACCGTAGTGTTACG 4189 Query 517483 ATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 517542 ||| | |||||||| | |||||||| ||||| | || || || | || | || Sbjct 4190 TGGAATGAGCTTGGTCATGACTCCACCTGCAGTTTCCAGTCCGAGCGATAACGGGGCAAC 4249 Query 517543 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACA---AGAATAGCTGC 517599 || | || | | || ||| | || || | || | || ||||| || || Sbjct 4250 GTCGAGAAGCAGCAGATCTTGCAACTTGGATGAAGATCCACTACCACTGAGAATTGCAGC 4309 Query 517600 TTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTT 517659 ||||| | ||| || ||||| ||||| || || || |||| | | || | ||| Sbjct 4310 TTGAACGGTAGCCCCGTATGCCACAGCCTCGTCCGGGTTAATCGACTTGAACAGATCTTT 4369 Query 517660 ACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAAC 517719 |||||||| || | | | || ||||| || || || | ||||| ||||| Sbjct 4370 GCCATTGAAGAAGTCCATCAACAACTGCTGCACCTTTGGGATTCGCGTCGATCCACCAAC 4429 Query 517720 TAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC 517779 || ||||| || | ||| || || |||||| || || || ||||| | || Sbjct 4430 CAAGACAATCTCGTTCACTTGGCTCTTCGACAGTTTGGAGTCACGTAGAACTTGGGCGAC 4489 Query 517780 GGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG 517839 ||||| | | | ||| | | ||| | || ||||| || | |||| Sbjct 4490 AGGTTCCATTGTCTTGCGAAAGTAACTAGCACACAAGTCCTCGAAACGTGCACGTGTAAT 4549 Query 517840 AGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGT-TTGAGTCG 517898 ||| ||| |||||||||| || ||||| ||||| | || || |||| ||| | || Sbjct 4550 GGTGGAATTGAAATCAATTCCATCAAACAACGAATCGATCTCGAT-GTAGGCTTGCGCCG 4608 Query 517899 AAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTG 517958 ||| || | | || |||||||| || || || |||| || | || | || | Sbjct 4609 AAGTGGACAAAGTGCGCTTAGCACGCTCGCAAGCAGTCCGGAGACGGCGAAGTGCAC--G 4666 Query 517959 CTGATTGATTCAAATCTGTTTT--ATATTTTCTCTTGAAATCTTCAACACACCATGTTAC 518016 ||| || | | | || | || ||||||| |||||| || | ||| | | || Sbjct 4667 CTGGTTCACTGACATATCCTTGCGATATTTTTGCTTGAACTCCGCCACAAAATACTCGAC 4726 Query 518017 AAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTG 518076 |||||| || ||||| |||||||||||||| | || | |||| ||| || | || | Sbjct 4727 AAGACGGTTGTCAAAGTCTTCACCTCCCAAGTGCGTGTCACCTGCCGTCGCCTTCACCTC 4786 Query 518077 GAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAA 518136 || | || ||||||| | | || | |||||| ||||| || || | |||||| Sbjct 4787 AAAGATGCCTTCTTCAATCGTTAGTAGCGACACATCAAACGTTCCGCCGCCTAGATCAAA 4846 Query 518137 AATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGC 518196 ||| | ||||| ||| | | | || | | |||||||| |||| ||||||||| Sbjct 4847 AATCAACACATTGTGTTCGCCGCCCCGCTTGT---CTAGACCATAGGCAATAGCAGCAGC 4903 Query 518197 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 518256 || || ||||| || || | || || || | |||||||||| ||| |||||||| || Sbjct 4904 CGTCGGCTCATTGATGATACGCAGCACGTTCAAACCAGCAATTACTCCGGCATCTTTGGT 4963 Query 518257 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTC 518316 ||||| | || ||||| ||||||||||| ||||| || | || || | | |||| Sbjct 4964 CGCTTGGCGCTGCGAATCATTAAAATATGCTGGAACTGTCACCACTGCGTTCTTCACTTG 5023 Query 518317 TTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTG 518376 || ||||| || || ||| || | |||||| | | | ||| || || || | Sbjct 5024 CTTCCCAATGTAGGCTTCTGCTGTCTCGCGCATTTTGATCAGCACCATGGACGAGATCTC 5083 Query 518377 TTCTGG--GGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATT 518433 || || ||||| | |||||| || |||| || || ||| | ||||| | Sbjct 5084 CTCCGGTTGGAATGT--CTTGGACTCGCCCTTGAACTG-CACGACAATTTGGGGTTTGCT 5140 Query 518434 ACCAA---CATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTT--TGG 518488 ||| | | | ||||| |||||||| | ||| || || || || ||||| | Sbjct 5141 CTCAAGCCCGCGAGTCACTTTGAATGGCCAATGTTTAATGTCCGACTG--CACTTCGAGA 5198 Query 518489 TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATT 518548 ||| | || | | || || || ||||| | || || | || ||| | || || Sbjct 5199 TCAGTGAATTTGCGTCCGATCAAGCGTTTGACGTCGAACACCGTGTTGTGCGCGTTCATA 5258 Query 518549 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATAT 518608 || |||| | || || ||||| ||||| || | ||||| ||||| || | ||||| Sbjct 5259 GCCACTTGGTTCTTTGCAGCATCGCCAATGAGGCGCTCTGTGTCTGTGAACGCCACATAC 5318 Query 518609 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCAT 518668 ||||| || || ||||| || ||||| |||||||| || || ||| |||| ||||| Sbjct 5319 GATGGGGTCGTACGATTCCCCTGATCGTTCGCAATGATCTCCACTCGGTCATTCTGCCAC 5378 Query 518669 ACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAA 518708 || || ||||| | | || || || | ||||||||||| Sbjct 5379 ACGCCAACACACGAATACGTCGTCCCCAGATCAATACCAA 5418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779629505635534