Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7045 150 2e-31 seq2671 134 2e-26 seq1 116 5e-21 seq43 86.0 8e-12 >seq7045 Length=3816 Score = 150 bits (166), Expect = 2e-31 Identities = 206/285 (72%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| |||||| |||||| || ||||| || | || | |||||| | Sbjct 3040 CTCATTGACACGTATATCAAGGATACTGTGGAGAAAAACTATCTGCTGCGTGCCATCGAG 2981 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAA-GTC 102166 ||| |||| || |||||||||||||| | ||||| |||| |||| || | || Sbjct 2980 ACAATTCCCTGCGTTCAAAAGAAAGCGAACTGGGCATTGAAATGGTGCGACCCGCGTGTG 2921 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 ||| ||| | |||||| | | || ||||| | || || ||||||||||| || || Sbjct 2920 TCGT-CCTACCCGGAGCGATTGCTGGCGTTTGCTTCAGTGGAAGGTATCTTCTTTTCGGG 2862 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 || |||||| |||| ||||||||||||||||| |||||||| |||||| ||||||| Sbjct 2861 GTCGTTCTGCAGCATTTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGTCTCAGCTTCTC 2802 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || ||| | ||| ||||||||| || | ||| ||| || || Sbjct 2801 GAATGAGATGATCAGTCGTGACGAAGGTATGCACACAGACTTCGC 2757 >seq2671 Length=8519 Score = 134 bits (148), Expect = 2e-26 Identities = 352/534 (66%), Gaps = 5/534 (1%) Strand=Plus/Plus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| || || || || || || || ||||| || || || | || || |||| Sbjct 5062 TTCACGCATGCCACGCCCACGCTGTTTAACGCCGGCACGCCGCGTCCGCAGTTGTCGTCG 5121 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 || ||||| | || | | || || || ||| | || || |||| ||| |||| | Sbjct 5122 TGCTTCCTGCTAGCCATGCAAGACGACTCCATCGAGGGAATCTACGACACGCTCAAGCAG 5181 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884 || || ||||| |||||||| || || ||||| || ||| || | || |||| Sbjct 5182 TGCGCGTGCATCTCCAAGTGGGCAGGAGGCATCGGCATCAGCATGCACAACATCCGAGCT 5241 Query 111885 AACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 111944 | ||| ||| | || || || || || | || || || || ||||| ||| Sbjct 5242 ACCAACAGCTACATTCGCGGCACCAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGC 5301 Query 111945 GTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATC 112001 ||||| |||| ||| |||||||| || |||| | || | ||||| || || || Sbjct 5302 GTATTCAACGACACGGCGCGCTACGTGGACCAGGGCGGAGGCAAACGCAAAGGCTCGTTC 5361 Query 112002 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 112061 || || ||| | || || |||||||| || | | |||||||| || |||| ||| Sbjct 5362 GCTGTGTATTTGGAACCGTGGCACGCAGACGTGTTCGAGTTCCTGGACCTGCGCAAGAAC 5421 Query 112062 CAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTC 112121 || || | ||| | || ||||| | |||| || || ||| | || ||||| Sbjct 5422 CACGGCAACGAGTTGCATCGAGCGCGCGACTTGTTCTATGCGCTATGGGTCCCTGATCTG 5481 Query 112122 TTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCC 112181 ||||||||||| || |||| | |||||| ||| | | || || || | | || || Sbjct 5482 TTCATGAAGAGGGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGCCCCAATGAAGCTCCG 5541 Query 112182 GGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGA 112234 ||||| | ||| ||| | ||| || ||||||||| | |||||| | ||||||| Sbjct 5542 GGTCTTTACGAGTGCTG-GGGAGACGAGTTTGAAACGCTCTACGAACAGTACGA 5594 >seq1 Length=128069 Score = 116 bits (128), Expect = 5e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || |||| || ||| || || || ||||||||||| || ||||||||| | Sbjct 111342 GAGCGTCTGCTCGCCTTCGCGGCGGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCC 111401 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||||||||||| ||||||||||| |||||| | ||||| |||||||| || Sbjct 111402 ATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCAGTTTCTCGAACGAGCTCATT 111461 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||| | ||| || ||||| Sbjct 111462 AGCCGTGACGAGGGCATGCACACGGACTTTGC 111493 >seq43 Length=56266 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 176891 GCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCA 176950 ||||| || ||||| | || || ||||||||||| |||||||| |||||||| ||| Sbjct 26152 GCATCGCGCACATTGAGAAGTTTACCGCGAAGAGGGAAAACACCGTACTGATCGCGTCCA 26211 Query 176951 ACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGT 177010 || || | || || || || || || | ||| || ||||| || || |||| |||||| Sbjct 26212 ACAACTGCAAGGCCTGCCACTGCAAGTGCTTTGGCGGAATCGCCTTCCGTCAAAATGAGT 26271 Query 177011 GTACACT 177017 | ||||| Sbjct 26272 GCACACT 26278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620555874668080