Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2671 127 2e-24 seq603 127 2e-24 seq696 86.0 7e-12 >seq2671 Length=8519 Score = 127 bits (140), Expect = 2e-24 Identities = 1022/1640 (62%), Gaps = 30/1640 (2%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| ||||| ||||| || |||||| ||||| | |||||| |||| ||| ||| Sbjct 6683 TAGTACATGCCCGTCTTGAGTCCCTTCTTCCAGGCGTAAAAATGCATGGAAGTGAGCTTG 6624 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | ||||| | || | ||| | ||||||| ||| ||| | || Sbjct 6623 CTGATCGTCGGGTCGGCGATGTGGATGTTAAGCGACTGACTCTGGCAAATGTAGGCGCCG 6564 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 |||||||| | || || | | ||| || | || ||||| ||||| || ||| Sbjct 6563 CGATCAGCTGACAGATCAAGTACTGCCTTCTGCTTGATCTCCCACACAGTTTTATACTTC 6504 Query 109594 TTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATG 109653 | ||| || || |||||| || || || || | || ||||| | | | || Sbjct 6503 TCCTTAATGATGTCAGGAATGACCTTGACCTTCTGCACCGAACCACCGTCACTAAGGATC 6444 Query 109654 AGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG 109713 | | | ||| | ||||| ||| | || |||| |||| | || | |||| Sbjct 6443 TGGTTGCGAACCTCAGGGGTCCAGATACCCAACTCAATGAGCTCGTTCATCAGGTACTTG 6384 Query 109714 TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGT 109773 ||||| | ||||| ||||| | || || || ||||| | |||||| || Sbjct 6383 TTGACGATCGTGAATTCGCCAGCCAACACACGACGATTATACATGTTCGACGTGTACGGC 6324 Query 109774 TCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATG 109833 |||| |||| |||||||| || || || ||||| || || || ||||| || || || Sbjct 6323 TCGATCGACTCGTTGTTGCCAAGAATCTGAGCAGTAGACGCAGTAGGCATCGGTGCAATT 6264 Query 109834 AGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAA 109893 ||||| ||| || | ||| | | | || ||| || || |||| | | Sbjct 6263 AGAAGCGAGTTGCGTACACCATGTTTGATCACATTCTCCTTCAACGCACCCCAGGCCCAC 6204 Query 109894 CGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCA 109953 | ||| | || || | || |||||| || ||| | ||||||| |||| Sbjct 6203 AGTCCAGAAGATGGGGTAACGCC---CCACATGTCGAATTGGAAGACACCCTTGCTAGCA 6147 Query 109954 GGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT 110013 || ||||||| |||| |||| |||| ||| ||| ||| | ||| || | ||| Sbjct 6146 GGGGAACCCTGGAAAGTCTCATACGGGCCCAATTCCTTGGCAATCTCCATCGACGTCTCC 6087 Query 110014 AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAG 110073 | || || | || || ||||| || || | |||| ||| | | || | Sbjct 6086 ATGGCAGCGTAGTAAATCGTCTCGAAGATGTTCTTGTTCAGCTCGCGGGCGTTCTCGCTC 6027 Query 110074 TCGAA-GGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAAT 110132 ||||| ||| || || | |||| ||| | || || |||||||| || || | || | Sbjct 6026 TCGAACGGGTAGTTCATTA-GAATGAACGCGTCAGCGAGACCCTGTACGCCAATCCCCAC 5968 Query 110133 GGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGAT 110192 ||||| || |||||| || ||||| | | || ||||| ||||| ||| || Sbjct 5967 AGGGCGGTGGCGCATGTTGGACTTGCGAGCTTCTACCACCGGGTAGTAGTTGACGTCAAT 5908 Query 110193 GACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAA 110252 ||| || ||||| ||||| || || | || | ||||| | || | ||| Sbjct 5907 CACCTTGTTCAGATTGCGGGTCACCACTTTGGTCACCTCGTACAGTTTCTGATAGTTGAA 5848 Query 110253 CGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGA 110312 | || | ||| || | ||||| || |||| |||||| | |||||||| | Sbjct 5847 CA----CGCCATCTTCC--ACGAACTTGGGCAGGGCAACAGACGCCAAGTTGCACACCGC 5794 Query 110313 AGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG---GAACTCTTAAT 110369 || ||| ||||| |||| | || ||||||||| || | | | Sbjct 5793 CACTTCATCTGGAGACGTGTACTCCATCACCTCGCAGCACAAGTTGCTGGAGCGAATCGT 5734 Query 110370 GACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGG 110429 | |||| |||| ||| ||||| ||| |||| || || || || |||||| | || Sbjct 5733 G---CCCAGATTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCTTTGTAAAGCATGAACGG 5677 Query 110430 GGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAG 110488 || ||||| |||| | | | ||||| ||| | | | ||| | || | Sbjct 5676 CACTCCTGTTTCAATCTGAGCGTCCAAGATGGCAAACCACAGTTGCTGCG-CATTGATGG 5618 Query 110489 TT--GCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCC 110546 || |||| || | || |||| ||||||| ||| | ||||| || | ||| Sbjct 5617 TTTTGCGT--GCACGTCCCTCCTTTTCGTACTGTTCGTAGAGCGTTTCAAACTCGTCTCC 5560 Query 110547 GTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCT 110605 | ||| || |||||||| || | | ||| ||||| | ||| || ||| Sbjct 5559 CCAGCAC-TCGTAAAGACCCGGAGCTTCATTGGGGCAGAACAAACTCCACTTGCCATTGG 5501 Query 110606 CCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAAC 110665 |||| ||||||||||||||||| ||||| | ||| | ||| |||| | ||| || | Sbjct 5500 CCTCCACCCTCTTCATGAACAGATCAGGGACCCATAGCGCATAGAACAAGTCGCGCGCTC 5441 Query 110666 GAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCC 110725 || | || | || ||||| ||| || |||| || || | | || | ||||| Sbjct 5440 GATGCAACTCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCTGCGTGCC 5381 Query 110726 ATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGC 110782 | ||||| | ||| ||||||| || || || || | || |||||| || |||| Sbjct 5380 ACGGTTCCAAATACACAGCGAACGAGCCTTTGCGTTTGCCTCCGCCCTGGTCCACGTAGC 5321 Query 110783 GTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTAC 110842 | || ||| | ||||| || | ||||| || || || || | ||| || || || | Sbjct 5320 GCGCCGTGTCGTTGAATACGCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTGGTGC 5261 Query 110843 CCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCC 110902 | | ||| | || | || || |||| ||| || || || || || || |||| Sbjct 5260 CGCGAATGTAGCTGTTGGTAGCTCGGATGTTGTGCATGCTGATGCCGATGCCTCCTGCCC 5201 Query 110903 ACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCT 110962 |||| || || |||| |||| || | || || || || || || || | || Sbjct 5200 ACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATTCCCTCGATGGAGTC-GTCT 5142 Query 110963 TG-TTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGT 111021 || |||| | || ||||| || |||| ||| ||||| ||||| || || || || || Sbjct 5141 TGCATGGCTAGCAGGAAGCACGACGACAACTGCGGACGCGGCGTGCCGGCGTTAAACAGC 5082 Query 111022 GTAGGTGTCGCATGAATGAA 111041 || || || ||||| |||| Sbjct 5081 GTGGGCGTGGCATGCGTGAA 5062 >seq603 Length=19689 Score = 127 bits (140), Expect = 2e-24 Identities = 284/420 (68%), Gaps = 15/420 (4%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | ||| | |||||||||||| | ||||| Sbjct 15627 ATCTGTCGGTCGAATCGACCAGGACGCAGGATAGCCTTGTCAAGAATATCGGCGCGGTTC 15686 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | || | || || | || |||| | || |||||| |||||||| || Sbjct 15687 GTACCAGCTAGAACAACCACACC---CTCACTCGAGTTGAAACCATCCATTTCGACAAGC 15743 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 | ||| || | ||| | |||||| || || ||| | | | | |||| ||||| Sbjct 15744 AACTGATTCAGCGTGTTTTCACGTTCGTCATTGCCGCCCG-AGAAGTTGCCCTT-GCTTC 15801 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | | |||||||| || |||||||| || || || ||||| ||| || || | Sbjct 15802 GTGCGCGTGCCACAGCGTCGATTTCATCGATAAACACAATGCACGGAGCGTTCGCGCGAG 15861 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| | ||||| ||||| || || ||||| |||||||| |||| ||||| Sbjct 15862 CCTCCTTGAACAAGTCACGCACACGAGACGGACCCACACCAACGAACATTTCAATGAAGT 15921 Query 11789 TTGCGGCAGAACA-CTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | ||||| ||||| ||| || ||| | | |||||| || | || || || Sbjct 15922 CCGAACCAGAAATGCTGAA-GAACGGCACACTGGCCTCACCTGCAGTAGCCTTTGCCAGC 15980 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 || ||||||||||||||||| | ||| | || | || || |||||||| |||||| Sbjct 15981 AGGGTCTTACCCGTACCAGGCGGACCCACCAGCAAAGCACCCTTAGGGATCTTAGCACCA 16040 >seq696 Length=18305 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 |||||||| || || || || ||||| | ||||| || || |||| |||||| | || Sbjct 6746 TTACCACGCAGCGGGAACACACCATAGTAGTCTCTGCCAACAACGGCAAGACCACCCACG 6687 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACA--CTTTCCAGACTGTG 168547 || | || || || || || || || || | ||| || || || |||| | || | Sbjct 6686 GCAACTGTCTTGGCAGAGTCTCCTTCCGTAAGGATAAGGGTGCAATCTTTGCT--CTTCG 6629 Query 168548 CCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGT 168590 | |||||||| | ||| |||||||||| |||||||||||| || Sbjct 6628 CAGTACCAGCGTGGTTAGCATCGTCCAGTTTGGGGATACCCGT 6586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588799020074200