Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7045 125 8e-24 seq1 100 3e-16 seq2789 86.0 7e-12 >seq7045 Length=3816 Score = 125 bits (138), Expect = 8e-24 Identities = 358/534 (67%), Gaps = 26/534 (5%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCAT-CAAGGCTAATGTTTTCCAT 117044 || ||||| || ||||| ||||||||||||||||| || | ||| | | | | ||||| Sbjct 2469 TACTCCCCCACACGCTTTTCAAAGAAGTTGGTCTTTCCCTGCAATGAGA-TCATATCCAT 2527 Query 117045 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGAC 117103 |||| || || ||||| |||| | || | ||| |||| | || || | | Sbjct 2528 CCAGTCGAACGGGTTCTTGACGTTGTATATCTTGGACACACCCAGCGAGTAC-AGCAAGC 2586 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-A 117162 | || | ||| |||||||||||| | |||| |||||||| ||||| | | | Sbjct 2587 GGTCAGCGACAAACTCAATGTACTGGCACATTAGAGTCGAGTTCATGCCGATCAACTCCA 2646 Query 117163 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCG 117222 || || || | || ||| |||| | | |||||| | ||||| || | ||| || Sbjct 2647 CA-GGAAGAGATTCGCAGACGAACTCGTGTTCAATCACCACCGCATCGCGGATGATCTCG 2705 Query 117223 TGGATAG---TTTC-GGTAGTGGGT----CTATTACGCAAAGT-CTTGAAGAGCTCCACG 117273 || | | |||| |||||| || | ||| || ||| | ||| | || | Sbjct 2706 TGTACACGACTTTCTGGTAGTTTGTTGACCAATTTCG---AGTACATGAGG-----CA-G 2756 Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 || || || ||| | ||| || || || || | ||||| ||||||| || || Sbjct 2757 GCGAAGTCTGTGTGCATACCTTCGTCACGACTGATCATCTCATTCGAGAAGCTGAGACCA 2816 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| |||| |||||| ||||| || ||||||||| Sbjct 2817 GGCATGAGGCCTCGCTTCTTGAGCCAGAAAATGCTGCAGAACGACCCCGAAAAGAAGATA 2876 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAA 117452 || ||||| | |||||||| | | ||||| | | |||| ||| || | ||| | Sbjct 2877 CCTTCCACTGAAGCAAACGCCAGCAATCGCTCCGGGTAGGA-CGACACACGCGGGTCGCA 2935 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 |||||||| |||||| ||||| ||||| | || || || | || | |||||| Sbjct 2936 CCATTTCAATGCCCAGTTCGCTTTCTTTTGAACGCAGGGAATTGTCTCGATGGC 2989 >seq1 Length=128069 Score = 100 bits (110), Expect = 3e-16 Identities = 293/445 (66%), Gaps = 10/445 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 111781 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 111722 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||||||||| | || | || |||| | || ||| || || Sbjct 111721 CAGTCGAAAGGGTTCTTCGCGTTGTAGATCTTGGAAACTCCCAGCGAGTA-GAGAAGGCG 111663 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | ||| |||||||||||| | |||| | ||||||||||||||||| | Sbjct 111662 GTCAGCCACGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATACCGATGAGCTCCAC 111603 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 || || | || | ||| | | ||| ||| | || || || |||||| |||| Sbjct 111602 CGGCAGCGAATCGCGCACAAACTCATGCTCGATCACCACAGCATCACGCACGATCTCGTG 111543 Query 117225 GATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 117280 | | ||| || || | | || | | | ||| || |||||| | Sbjct 111542 CACGCGGCTCTCCGGCAGCTTGTTCACGA-GCTTCGAGTACATGAGG--CA-GGCAAAGT 111487 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 || ||| | ||||| || ||| ||| || || || ||||| | || || ||||||| Sbjct 111486 CCGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAACTGAGACCCGGCATGA 111427 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 |||| |||||||| | ||| | || | |||||| || || ||||||||||| || |||| Sbjct 111426 GACCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCTTCCA 111367 Query 117401 CACACGCAAACGCAAAAAGGCGCTC 117425 | ||| || || | || ||||| Sbjct 111366 CCGCCGCGAAGGCGAGCAGACGCTC 111342 >seq2789 Length=8247 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 1776 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 1717 Query 136224 CAGGTAGGAGCT 136235 | |||||||||| Sbjct 1716 CCGGTAGGAGCT 1705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589803518144360