Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq321 156 9e-33 seq238 154 3e-32 SEQ15627 138 3e-27 seq1885 118 2e-21 seq5652 89.7 1e-12 seq3744 89.7 1e-12 >seq321 Length=26016 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| | || ||||| || || || ||||| ||| ||||| | ||||| || Sbjct 9408 ACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCATCCTCT 9349 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || ||||| ||||| ||||| ||| Sbjct 9348 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGA 9289 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||||||||| ||||| || |||| |||||| ||||| || || || | ||||| Sbjct 9288 ATTTTTTGCTTCACGTTGTCGATGGAGTCCGACGGCTCCACGTCGAGTGTGATGGTCTTG 9229 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || ||||| | ||||| Sbjct 9228 CCGGTCAAAGTCTTCACGAAGATCTGCAT 9200 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| || ||||| ||||| || ||||| | ||||| || ||||| Sbjct 9859 GTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCCTCTAGCTG 9800 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| |||||||||||||| ||||| |||||||| ||||| ||||| || Sbjct 9799 CTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTT 9740 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| ||||| ||||| | |||||| ||||| || | || | ||||| || || Sbjct 9739 CTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTTGCCGGT 9680 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | ||||| Sbjct 9679 CAACGTCTTCACAAAGATCTGCAT 9656 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||| ||||| || ||||| | ||||| || Sbjct 9636 ACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCCTCT 9577 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| |||||||||||||| ||||| |||||||| ||||| ||| Sbjct 9576 AGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGA 9517 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| ||||| ||||| | |||||| ||||| || | || | ||||| Sbjct 9516 ATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTTG 9457 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 9456 CCGGTCAACGTCTTCACAAAGATCTGCAT 9428 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || || || ||||||||| | || | |||||||| Sbjct 10092 ACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGCTCAATGTGCGACCATCTTCT 10033 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| |||||||||||||| ||||| ||| Sbjct 10032 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGA 9973 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || || ||||| | ||| || || || || ||||||| || || Sbjct 9972 ATCTTCTGCTTCACATTGTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTA 9913 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | ||||| Sbjct 9912 CCCGTAAGAGTCTTCACGAAAATCTGCAT 9884 >seq238 Length=29854 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| ||||| || || ||||| || ||||| ||||| || ||||| | || || Sbjct 20954 CAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGACCGTC 21013 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || || ||||| || |||||||| ||||| || ||||| || || |||||||| ||||| Sbjct 21014 CTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 21073 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| |||||||||||||| || || | |||||| |||||| || ||||||| || Sbjct 21074 TTGAATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCACGTCGAGGGTAATAGT 21133 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||| || ||||| | ||||| Sbjct 21134 TTTACCCGTAAGAGTCTTGACGAAAATCTGCAT 21166 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| ||| || || | ||||| ||| Sbjct 20730 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCATCCTCG 20789 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| || || || ||||| ||||| |||||||| ||||| ||| Sbjct 20790 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGA 20849 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||| || || || || | |||||| ||||| || || || | |||||| Sbjct 20850 ATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGCTCCACGTCCAGAGTGATCGTCTTG 20909 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 20910 CCGGTCAATGTCTTCACAAAAATCTGCAT 20938 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||||||| || || | ||||| ||| Sbjct 21414 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCCTCG 21473 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || || || || ||||| ||||| ||||| ||| Sbjct 21474 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGA 21533 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||||||||| || || | ||||| ||||| || || || | |||||| Sbjct 21534 ATTTTCTGCTTGACGTTGTCGATCGAATCCGACGGCTCCACGTCGAGCGTGATCGTCTTG 21593 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 21594 CCGGTGAGGGTCTTCACAAAGATCTGCAT 21622 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||| || || || || ||||| || || || | || || ||| Sbjct 21186 ACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCCTCG 21245 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| ||||| || ||||| || || |||||||||||||| ||| Sbjct 21246 AGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGA 21305 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||| || || | || ||| || || || | || | |||||| Sbjct 21306 ATCTTCTGCTTGACGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGTCTTG 21365 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 21366 CCGGTCAACGTCTTGACGAAGATCTGCAT 21394 >SEQ15627 Length=1670 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || ||||| ||||| ||| || || | || |||||| Sbjct 1391 ACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCG 1450 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || ||||||| || |||| ||||| ||||| ||| Sbjct 1451 AGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCCTGA 1510 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||||||||| || || | |||||| ||||| || || || | ||||| Sbjct 1511 ATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTCTTG 1570 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 1571 CCGGTGAGGGTCTTCACAAAAATTTGCAT 1599 >seq1885 Length=10629 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | || || ||||||||||| || |||||||| Sbjct 6243 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6184 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || || |||||||| ||||| || ||||| ||||||||||| ||| Sbjct 6183 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 6124 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| |||| || ||||| || || || | ||||| || |||| || || || || Sbjct 6123 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 6064 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 6063 ATCTGCAT 6056 >seq5652 Length=4686 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 194964 GTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTG 195023 |||||| ||||||| | ||||||||||| ||||| ||||| || || | || ||||| Sbjct 117 GTAATCTCCAAGAGTGCGTCCATCTTCGAGTTGCTTTCCTGCAAATATCAACCGCTGTTG 176 Query 195024 GTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 ||| || ||| | || || | |||||||||||| ||||| || || || || | |||| Sbjct 177 GTCGGGTGGAGTACCGTCCTGGTCTTGAATTTTCTGCTTCACATTGTCGATCGAATCCG 235 >seq3744 Length=6606 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 194964 GTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTG 195023 |||||| ||||||| | ||||||||||| ||||| ||||| || || | || ||||| Sbjct 3076 GTAATCTCCAAGAGTGCGTCCATCTTCGAGGTGCTTTCCTGCAAAAATCAACCGCTGTTG 3135 Query 195024 GTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 ||| || ||| | || || | |||||||||||| ||||| || || || || | |||| Sbjct 3136 GTCGGGTGGAGTACCATCCTGGTCTTGAATTTTCTGCTTCACATTGTCGATCGAATCCG 3194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109139880013913