Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq321 111 1e-19 seq1885 102 5e-17 seq238 93.3 3e-14 SEQ15627 87.8 1e-12 >seq321 Length=26016 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||||||||| ||||| || | ||| |||| || Sbjct 9864 ACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCCTCT 9805 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || |||||||| ||||| | || | || |||||||| | Sbjct 9804 AGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGA 9745 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| || ||| | || || || | ||| ||||| | || ||||| || Sbjct 9744 ATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTTG 9685 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||||||||||||||||| Sbjct 9684 CCGGTCAACGTCTTCACAAAGATCTGCAT 9656 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | ||| |||| || ||||| || || ||||| Sbjct 9618 TCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCAAAG 9559 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||||||| ||||| | || | || |||||||| ||||||||| || ||| Sbjct 9558 ATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTG 9499 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || || | ||| ||||| | || ||||| || || || | ||||||||| Sbjct 9498 TCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTCTTGCCGGTCAACGTCTTCACA 9439 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 9438 AAGATCTGCAT 9428 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| || || | || | | || |||| || ||||| || ||||| || Sbjct 10074 TCCTTCTGGATGTTGTAATCGCTCAATG-TGCGACCATCTTCTAGCTGCTTGCCGGCGAA 10016 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | || |||||||| ||||||||| || || Sbjct 10015 GATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACATT 9956 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| || | ||| || || | ||| || ||||| ||||| ||||||||||| Sbjct 9955 GTCAATCGAGTCGGACGGCTCGACGTCCAGGGTAATAGTTTTACCCGTAAGAGTCTTCAC 9896 Query 34970 AAAGATCTGCAT 34981 || |||||||| Sbjct 9895 GAAAATCTGCAT 9884 Score = 84.2 bits (92), Expect = 1e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | ||| |||| || ||||| || || || || Sbjct 9390 TCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCATCCTCTAGCTGCTTGCCAGCGAAG 9331 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || |||||||| ||| || || || ||| Sbjct 9330 ATGAGGCGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATTTTTTGCTTCACGTTG 9271 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || || | ||| || |||| || ||||| || || || | ||||||||| Sbjct 9270 TCGATGGAGTCCGACGGCTCCACGTCGAGTGTGATGGTCTTGCCGGTCAAAGTCTTCACG 9211 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 9210 AAGATCTGCATCTT 9197 >seq1885 Length=10629 Score = 102 bits (112), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 11/198 (6%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| || | || | || || ||||| || ||||| || || Sbjct 6243 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6184 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG----- 34908 || || |||||||| |||| | || |||||||| || ||||| |||||| Sbjct 6183 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 6124 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 ||||| ||| |||| || || || | || ||||| || ||||| || ||||||| Sbjct 6123 ATGCTGTCGGA----CGGC-TCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCA 6069 Query 34969 CAAAGATCTGCAT-ATTC 34985 ||||||||||||| |||| Sbjct 6068 CAAAGATCTGCATGATTC 6051 >seq238 Length=29854 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | || | || || || || || || || || Sbjct 20976 TCCTTCTGAATGTTGTAGTCACTCAGAGTGCGACCGTCCTCAAGTTGCTTGCCAGCGAAG 21035 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | || |||||||| |||||| || |||||| Sbjct 21036 ATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTG 21095 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | || || |||| ||| || ||||| ||||| |||||||| || Sbjct 21096 TCGATCGAGTCCGACGGTTCCACGTCGAGGGTAATAGTTTTACCCGTAAGAGTCTTGACG 21155 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 21156 AAAATCTGCAT 21166 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || || | || |||| || ||||| || || || || Sbjct 21432 TCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAG 21491 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| ||| ||||| |||||| Sbjct 21492 ATAAGACGCTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTG 21551 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || |||| || || || || || ||||| ||||||||| Sbjct 21552 TCGATCGAATCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCGGTGAGGGTCTTCACA 21611 Query 34971 AAGATCTGCATATTC 34985 ||||||||||| ||| Sbjct 21612 AAGATCTGCATCTTC 21626 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| ||| | || | || || ||||| || || || || Sbjct 21203 TTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAA 21262 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| |||||||| | || | || || ||||| ||||||||| |||||| Sbjct 21263 GATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATCTTCTGCTTGACGTT 21322 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| || | ||| ||||| | || || || || || || | ||||| || Sbjct 21323 GTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGTCTTGCCGGTCAACGTCTTGAC 21382 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 21383 GAAGATCTGCAT 21394 >SEQ15627 Length=1670 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||||||||| ||||| ||| | || | || || Sbjct 1391 ACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCG 1450 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || | ||||| | | | || |||||||| | Sbjct 1451 AGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCCTGA 1510 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || ||||| |||||| | ||||| || | ||| || |||| || || || || Sbjct 1511 ATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTCTTG 1570 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || ||||| ||||||||||| || ||||| ||| Sbjct 1571 CCGGTGAGGGTCTTCACAAAAATTTGCATCTTC 1603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324538490369592