Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq772 132 4e-25 >seq772 Length=17468 Score = 132 bits (146), Expect = 4e-25 Identities = 362/547 (66%), Gaps = 13/547 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || || || ||| |||||||| || ||||| |||| ||| || Sbjct 5416 GGTATTGATCTGGGGACGACGTATTCGTGTGTTGGCGTGTGGCAGAATGACCGAGTGGAG 5357 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||| || ||||| || || | || || ||||| ||||| | ||||| || || Sbjct 5356 ATCATTGCGAACGATCAGGGGAATCGTACGACCCCATCGTATGTGGCGTTCACAGACACA 5297 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 || | | |||| ||||| ||||| | |||| || || | ||| || | Sbjct 5296 GAGCGCCTCATTGGCGATGCTGCAAAGAACCAAGTGGCTATGAACGCGCACAACACGGTG 5237 Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGAT-TCGACTGTTCAGGCAGATAT 550236 || || | ||||| || || ||| | | || | |||| |||| || ||| | || || Sbjct 5236 TTCGACGTCAAACGCTTGATCGGACGCAAATTCACTGATCTCGAA-GTGCAGTCGGACAT 5178 Query 550237 GAAGCATTGGCCTTTCCAAATTGTTAAT-----GTTTCTG-GAAAACCTTATATTGAAGC 550290 || |||||||| ||| || || | | | || | | ||||| | |||| | Sbjct 5177 TAAACATTGGCCATTCAAA---GTGACTCGCGGGCTTGAGAGCAAACCCCAAATTGTCG- 5122 Query 550291 TACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAA 550349 | | | |||| || || | || || || || | || || || ||||| | | Sbjct 5121 TGCAGTTCAAGGGCGAGTCCAAGACATTCCAACCGGAGGAGATCTCGTCCATGGTGCTGA 5062 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | |||||| | ||||| || | |||| | |||| | | | ||||| | | Sbjct 5061 TCAAAATGCGCGAGACAGCAGAAGCCTACATTGGGAAGCAAGTGAAGAACGCAGTGGTGA 5002 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || ||||||||||||||||| || || || ||||| || |||||||| ||| |||| Sbjct 5001 CAGTTCCAGCATATTTTAATGATTCGCAGCGCCAAGCGACCAAAGATGCCGGAGTAATTG 4942 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| | || || || ||||| |||||||| || || |||||||| |||| ||||| | Sbjct 4941 CTGGTTTGAACGTGCTGCGTATCATCAATGAGCCGACGGCTGCTGCTATTGCCTATGGTC 4882 Query 550530 TTGATAA 550536 | || || Sbjct 4881 TAGACAA 4875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028024709264110