Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq465 134 1e-26 >seq465 Length=22214 Score = 134 bits (148), Expect = 1e-26 Identities = 265/386 (69%), Gaps = 12/386 (3%) Strand=Plus/Plus Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 |||||||||||||| | || ||| || || || || || | |||| ||||| || Sbjct 6485 AGCGGTTCCACGTGGTTCAAGTACACATGTGCATCGCCGATAACATGGATGAACTCGCCA 6544 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGTAGCTGGCGATGT 29920 |||| ||| || | || || || | || || |||| || | || ||||||||| |||| Sbjct 6545 GGTTTTAGTCCTGCTACTTGGGCAACCA-GT-CGTGTCAGCAAAGCGTAGCTGGCAATGT 6602 Query 29921 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTC 29980 | || || || ||||| ||||| || |||| | |||||| | ||| || || | ||| | Sbjct 6603 TGAACGGAACACCGAGGCCCATATCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCCC 6662 Query 29981 CGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGT 30040 | || |||||| |||||||| | |||| |||||||| || ||||| | || || Sbjct 6663 CATCAGCCACGTAGAACTGACAGAACATGTGACACGGAGGCAGCGCCATCTCGTTCAGGT 6722 Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGA 30097 | |||||||| || | | || || |||||||| |||||| ||| | || Sbjct 6723 CCGCAGGGTTCCACGCCGATAAGACAATCCGCCTGTCACTTGGGTTCGTCCGCAGCTTGT 6782 Query 30098 GGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCC 30156 || ||| || || || || ||||| ||| || | ||||||||| |||||| Sbjct 6783 GGATCAC----TTCAGCGAGTTGGTCCACGCCCTGTCCAGTGTAGTCTGCATGCATGTCT 6838 Query 30157 GTGTACTCTGCTCCGAAATGCCTCCA 30182 ||||||| || || || || | ||| Sbjct 6839 GTGTACTTGGCCCCAAAGTGGCGCCA 6864 Score = 93.3 bits (102), Expect = 3e-14 Identities = 191/284 (67%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174 || || ||||| ||| ||| | ||||||||| |||||| ||||||| || || || Sbjct 6918 AGTTGGTCCACGCCCTGCCCAGTGTAGTCTGCATGCATGTCTGTGTACTTGGCCCCAAAG 6977 Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234 || | ||||||||| || || |||||||| |||||||| |||| | | || | || Sbjct 6978 TGGCGCCACTGGAATCCATAGACCGGTCCAAGGTCTCCGACTTCTCGGGACTGCAGTCCT 7037 Query 30235 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 30294 | |||||| | || | || || || |||||||||| | | |||||| Sbjct 7038 CGACTGTCCAGGTACTCACGCGATCCATTTCCGTCCCAGATGTGAATATCCTTCTGCTGT 7097 Query 30295 AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTC 30354 ||| | | | | ||| || || | |||||||||||| |||||| | || | | Sbjct 7098 AGCGTGTGCGCGCTAGTGTCGCCGCTAATGAACCACAGCAGTTCCTCCGCCACTCCTCGC 7157 Query 30355 CAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGTCCCT 30394 || || || | ||||||||| || | || ||| ||||||| Sbjct 7158 CAGAACACACGCTTGGTCGTCAGCAATGGGAACACGTTGTCCCT 7201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408497885130947