Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 257 3e-63 seq2671 250 5e-61 seq7045 199 7e-46 >seq1 Length=128069 Score = 257 bits (284), Expect = 3e-63 Identities = 566/840 (67%), Gaps = 15/840 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| || |||||| | ||||| Sbjct 111782 GTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 111723 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | ||| || | | | | |||| | | || ||| | Sbjct 111722 CCAGTCGAAAGGGTTCTTCGCGTTGTAGATCTTGGAAACTCCCAGCGAGTAGAGAAGGCG 111663 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||| ||||| | |||||||| |||||| || ||||| ||| Sbjct 111662 GTCAGCCACGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATACCGATGAGCTCCAC 111603 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 |||| | | | |||||| | ||| ||| ||| || || | ||| |||| | Sbjct 111602 CGGCAGCGAATCGCGCACAAACTCATGCTCGATCACCACAGCATCACGCACGATCTCGTG 111543 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| ||| | | ||||| || | |||| | || | | |||||||||||| Sbjct 111542 CACGCGGCTCTCCGGCAGCTTGTT---CACGAGCTTCGAGTACATGAGGCAGGCAAAGTC 111486 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| ||||| ||||| |||||| |||| ||||| | |||||| ||||||| Sbjct 111485 CGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAACTGAGACCCGGCATGAG 111426 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| |||||||||||||| ||||| Sbjct 111425 ACCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCTTCCAC 111366 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG-AGATCCAGGAAA 48320 |||||||| ||| || | ||| | || | || | | | | ||| | Sbjct 111365 CGCCGCGAAGGCGAGCAGACGCTC-CGGATACGAGGACACACGAGGGTCGCACCATCGGA 111307 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT--T 48378 | ||||||| ||| |||||||||| ||||| || || || || || || | || | | Sbjct 111306 GAGCCCAGTGTGCTTTCTTCTTGACACATGGGATGGTGTCAATAGCACGCAGCAGGTGGT 111247 Query 48379 CTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGA 48435 | | | | |||| |||||| | || || | | |||||| | ||| | ||| || Sbjct 111246 CCTTCTC-CACC-GCGTCCTTGATGTACGTGTCAATAAGCAGC---GAGTAGACCTCGGA 111192 Query 48436 GTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCAC 48495 ||| | ||||| || ||||||||||| || |||||| || ||||| |||||||| Sbjct 111191 GTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCACCGCGCCTCTGGTACCTGCAC 111132 Query 48496 TTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAA 48555 ||| || ||| || || ||||| ||||| || || || || |||||||| Sbjct 111131 TTCGTTGCTGAAGTTCATTGCCAAGTTCTCGTTGACGATGCCGTCGCTGGCCGCAAAGAA 111072 Query 48556 GGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTAC 48615 ||| || || || || | ||| ||||||||||| | ||||| |||| ||| | Sbjct 111071 GGCGAGCACGTGCTTGATGAAGTGGCGCTCGTTATCCGTGAGGTTGCCCCAGTCCTTGAG 111012 Query 48616 GTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 ||| | | || || | ||||| | ||||||||||| || || || |||||||| Sbjct 111011 GTCGTGCACTAGATCGAGCTCTTCGGCCGTCCAGAAGGATGCCTCGGCCTTCTTGTACAT 110952 >seq2671 Length=8519 Score = 250 bits (276), Expect = 5e-61 Identities = 851/1305 (65%), Gaps = 46/1305 (4%) Strand=Plus/Minus Query 213119 CCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGG 213178 ||||||||| || || |||| || ||||| | ||| |||||| ||| || || Sbjct 6180 CCACATGTCGAATTGGAAGACACCCTTGCTAGCAGGGGAACCCTGGAAAGTCTCATACGG 6121 Query 213179 GCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAA 213238 ||| |||||||| | ||| |||| || || |||||||||||| || || || || Sbjct 6120 GCCCAATTCCTTGGCAATCTCCATCGACGTCTCCATGGCAGCGTAGTAAATCGTCTCGAA 6061 Query 213239 TATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAA 213298 || | | |||| |||| ||| | | | ||| || |||| | ||| Sbjct 6060 GATGTTCTTGTTCAGCTCGCGGGCGTTCTCGCTCTCGAACGGGTAGTTCATTAGAATGAA 6001 Query 213299 CACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-G 213357 | | ||||| || ||||| || || || || | || | ||| | || ||| |||||| | Sbjct 6000 CGCGTCAGCGAGACCCTGTACGCCAATCCCCACAGGGCGGTGGCGCATGTTGGACTTGCG 5941 Query 213358 AGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCA 213417 ||| || ||| ||||| ||||| ||| || | |||||| || |||||||| ||| Sbjct 5940 AGCT-TCTACCACCGGGTAGTAGTTGACGTCAATCACCTTGTTCAGATTGCGGGTCACCA 5882 Query 213418 CTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACT 213477 ||||||| || | | ||| | || | ||||||||| || || | ||| |||| Sbjct 5881 CTTTGGTCACCTCGTACAGTTTCTGATAGTTGAACACG------CCATCTTCCACGAACT 5828 Query 213478 CAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC--CTGAGAGTCTGTGTACTC 213535 |||||||| | |||| |||||| || ||||| || ||| ||| | |||||||| Sbjct 5827 TGGGCAGGGCAACAGACGCCAAGTTGCACACCGCCACTTCATCTG-GAGAC-GTGTACTC 5770 Query 213536 CATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTT 213595 ||| | |||| ||||| ||||||| | || || |||||||| ||||| ||||| ||||| Sbjct 5769 CATCACCTCGCAGCACAAGTTGCTGGAGCGAATCGTGCCCAGATTCTGCTGGTTCGACTT 5710 Query 213596 TGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAG 213655 |||||| | || ||||| |||||| | || || || || | ||| | ||| Sbjct 5709 GCGGTTGGCCGCGTCTTTGTAAAGCATGAACGGCACTCCTGTTTCAATCTGAGCGTCCA- 5651 Query 213656 TATCTGGC--TCCAGAGGTACCTGGCCTTGA-CCACCCGCCTGACAGCTCCGGGCGTAGC 213712 | |||| ||| || | | || |||| || || || ||| | | Sbjct 5650 -AGATGGCAAACCACAGTTGCTGCGCATTGATGGTTTTGCGTG-CACGTCCCTCCTT--- 5596 Query 213713 CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA-C 213771 |||||||||||||||||| | || |||| |||||| | || || |||||| | Sbjct 5595 TTCGTACTGTTCGTAGAGCGTTTCAAACTCGTCTCCCCAGCACTCGTAAAGACCCGGAGC 5536 Query 213772 AGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGT 213831 || ||| || | | ||||| | || | | || |||| ||||||||| | Sbjct 5535 TTCAT-TGGGGCAGAACAAACTCCACTTGCCATTGGCCTCCACCCTCTTCATGAACAGAT 5477 Query 213832 CCGGGACCCACAGCGCGGTGAACAGGTC-CCTGGTC--CTCCTCTCGTCCACTCCAGAGT 213888 | |||||||| ||||| ||||| ||| | | || | ||||| || || Sbjct 5476 CAGGGACCCATAGCGCATAGAACAAGTCGCGCGCTCGATGCAACTCGT---TGCCGTGGT 5420 Query 213889 TTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAA 213948 | |||||||| || || || || || | ||| ||||||||||| |||| || | || | Sbjct 5419 TCTTGCGCAGGTCCAGGAACTCGAACACGTCTGCGTGCCACGGTTCCAAATACACAGCGA 5360 Query 213949 AGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGC 214005 | | ||| | ||| |||||||||||||| | ||| |||||| | || Sbjct 5359 ACGAGCCTTTGCGTTTGCCTCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAATACGC 5300 Query 214006 GCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGG 214065 |||| | ||| | | ||||||||| |||||||| || || || | || | Sbjct 5299 GCAGCATGGGGATGATGCCGTTGGACGAGCCGTTGGTGCCGCGAATGTAGCTGTTGGTAG 5240 Query 214066 CCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGC 214125 | | | |||| |||| || || ||||| || || |||||||||| ||||| Sbjct 5239 CTCGGATGTTGTGCATGCTGATGCCGATGCCTCCTGCCCACTTGGAGATGCACGCGCACT 5180 Query 214126 GCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGC 214185 || | | || || ||| || | ||| ||| ||| | | |||| |||||| Sbjct 5179 GCTTGAGCGTGTCGTAGATTCCCTCGATGGAGTCGTCTTGCATGGCTAGCAGGAAGCACG 5120 Query 214186 TCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAA 214245 ||| | ||| || | | || ||| | ||| || |||||||| ||||||| | | | Sbjct 5119 ACGACAACTGCGGACGCGGCGTGCCGGCGTTAAACAGCGTGGGCGTGGCATGCGTGAAGA 5060 Query 214246 ACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCT 214305 |||| | || | |||| ||| |||| ||| | | |||||||| ||||||||| Sbjct 5059 ACTTCTGCGACATGAGCTCGTACGTCTGCAGCGCCGCCTGGATGTCGGTCTTGTGGATGC 5000 Query 214306 GTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT- 214363 || || ||| | ||| | ||| ||||| |||| ||||| |||| ||| || Sbjct 4999 CCAGCGC-CACGCGCATGATCATCTGCTGCGGCCGCTCTA---CCACTTT---GCCGTTC 4947 Query 214364 -----GAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 || |||||| | |||||| |||||||| || |||||| Sbjct 4946 ACGCGGAAGAGGTAGCCTCTCTCCAGCGTCTTGAAGCCGAAGTAG 4902 >seq7045 Length=3816 Score = 199 bits (220), Expect = 7e-46 Identities = 555/844 (66%), Gaps = 23/844 (3%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| |||||||| | || ||||||||||| ||||| |||| ||| ||||| | ||||| Sbjct 2468 GTACTCCCCCACACGCTTTTCAAAGAAGTTGGTCTTTCCCTGCAATGAGATCATATCCAT 2527 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | | || |||| | | ||||| | | Sbjct 2528 CCAGTCGAACGGGTTCTTGACGTTGTATATCTTGGACACACCCAGCGAGTACAGCAAGCG 2587 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || ||||| |||| ||||| | |||| || || ||||||||| || | ||| Sbjct 2588 GTCAGCGACAAACTCAATGTACTGGCACATTAGAGTCGAGTTCATGCCGATCAACTCCAC 2647 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | || | || ||||| | || ||| ||| || || | | |||| | Sbjct 2648 AGGAAGAGATTCGCAGACGAACTCGTGTTCAATCACCACCGCATCGCGGATGATCTCGTG 2707 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 || || |||| |||||||| || | | | || | | |||||| ||||| Sbjct 2708 TACACGACTTTCTGGTAGTTTGTTGACCAATTTCGAG---TACATGAGGCAGGCGAAGTC 2764 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 |||||| |||||||| || ||||| | | | || ||||||| |||||||||||||| Sbjct 2765 TGTGTGCATACCTTCGTCACGACTGATCATCTCATTCGAGAAGCTGAGACCAGGCATGAG 2824 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGC-GAAAGAGCCAGAGAAGAAGATGCCCTCCA 48260 || | || ||||||||||||| ||| || ||| || || || |||||||| || |||| Sbjct 2825 GCCTCGCTTCTTGAGCCAGAAAA-TGCTGCAGAACGACCCCGAAAAGAAGATACCTTCCA 2883 Query 48261 CTGCCGCGAACGCGGTGAGC-CTCTCTCC-----GAAAGAAGCGTTCTTGTCTGAGATCC 48314 ||| || ||||| ||| || |||| | | || | | ||| | || Sbjct 2884 CTGAAGCAAACGC---CAGCAATCGCTCCGGGTAGGACGACACACGCGGGTC---GCACC 2937 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | | ||||||| || ||||| | | ||| || || ||||| ||||| || | | Sbjct 2938 ATTTCAATGCCCAGTTCGCTTTCTTTTGAACGCAGGGAATTGTCTCGATGGCACGCAGCA 2997 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCT 48431 | | || ||| | | ||| | ||| || | ||||||| || ||| | | Sbjct 2998 GATAGTTTTTCTCCACAGTATCCTTGATATACGTGTCAATGAGCAG---TGAGTAGACTT 3054 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||||| ||||||||| | || ||| ||||| Sbjct 3055 CGGAGTGGATGTTCTCAATGGCGATCTGGAAACCGTAGAAGCATCGAGCTTCAGGCACCT 3114 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 ||||||| || ||| || |||||| |||||||| |||||||| ||||| | Sbjct 3115 GCACTTCGTTGCTGAAGTTCATGGCCAGATTTTCATTGACGATCCCATCACTGGCAGCGA 3174 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 | || || || || ||||| | ||| |||||||| || | ||||| | ||| | | Sbjct 3175 AAAATGCGAGCACGTGTTTGATGAAGTGGCGCTCATTATCCGTGAGTTTCTCCCAATCTT 3234 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | ||| | | || || | ||| || | |||||||| || || ||||| |||| Sbjct 3235 TGAGGTCGTGCACGAGATCGAGTTCCTCGGCTGTCCAGAACGAAGCTTCCGCTTTCTTGT 3294 Query 48672 ACAT 48675 |||| Sbjct 3295 ACAT 3298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931252886037760